Hb_003617_020

Information

Type -
Description -
Location Contig3617: 13915-18496
Sequence    

Annotation

kegg
ID tcc:TCM_037252
description Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
nr
ID XP_012077329.1
description PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07700 PE=4 SV=1
Gene Ontology
ID GO:0016020
description core-2 i-branching beta- -n-acetylglucosaminyltransferase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37188: 13899-14095 , PASA_asmbl_37189: 14102-18506
cDNA
(Sanger)
(ID:Location)		 001_G03.ab1: 13899-14095

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003617_020 0.0 - - PREDICTED: uncharacterized protein LOC105638179 [Jatropha curcas]
2 Hb_000329_230 0.0655905354 - - PREDICTED: uncharacterized protein LOC105643152 [Jatropha curcas]
3 Hb_001357_040 0.0754315317 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
4 Hb_012395_170 0.0778112874 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005276_060 0.07828682 - - PREDICTED: cyclin-P3-1 isoform X2 [Jatropha curcas]
6 Hb_000322_070 0.0786061479 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1 [Jatropha curcas]
7 Hb_000072_120 0.0800771115 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_000291_150 0.0829896405 - - PREDICTED: serine hydroxymethyltransferase 7 [Jatropha curcas]
9 Hb_000009_400 0.0855889445 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
10 Hb_001674_030 0.0857980575 - - PREDICTED: BTB/POZ domain-containing protein At2g24240 [Jatropha curcas]
11 Hb_001766_080 0.0860165193 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
12 Hb_004725_050 0.0861803897 - - Rhomboid protein, putative [Ricinus communis]
13 Hb_005051_020 0.0864084768 - - hypothetical protein JCGZ_20345 [Jatropha curcas]
14 Hb_001473_160 0.086969681 - - Vesicle-associated membrane protein, putative [Ricinus communis]
15 Hb_000146_040 0.0903938099 - - PREDICTED: reticulon-like protein B11 [Jatropha curcas]
16 Hb_000390_250 0.0931671545 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
17 Hb_001679_050 0.0948105429 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
18 Hb_000140_350 0.0966163258 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000213_010 0.0979825786 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
20 Hb_001016_050 0.0999786896 - - drought-inducible protein [Manihot esculenta]

Gene co-expression network

sample Hb_003617_020 Hb_003617_020 Hb_000329_230 Hb_000329_230 Hb_003617_020--Hb_000329_230 Hb_001357_040 Hb_001357_040 Hb_003617_020--Hb_001357_040 Hb_012395_170 Hb_012395_170 Hb_003617_020--Hb_012395_170 Hb_005276_060 Hb_005276_060 Hb_003617_020--Hb_005276_060 Hb_000322_070 Hb_000322_070 Hb_003617_020--Hb_000322_070 Hb_000072_120 Hb_000072_120 Hb_003617_020--Hb_000072_120 Hb_001473_160 Hb_001473_160 Hb_000329_230--Hb_001473_160 Hb_000329_230--Hb_000072_120 Hb_000390_250 Hb_000390_250 Hb_000329_230--Hb_000390_250 Hb_003906_200 Hb_003906_200 Hb_000329_230--Hb_003906_200 Hb_001674_030 Hb_001674_030 Hb_000329_230--Hb_001674_030 Hb_004725_050 Hb_004725_050 Hb_001357_040--Hb_004725_050 Hb_001377_270 Hb_001377_270 Hb_001357_040--Hb_001377_270 Hb_001357_040--Hb_001674_030 Hb_000080_150 Hb_000080_150 Hb_001357_040--Hb_000080_150 Hb_000931_020 Hb_000931_020 Hb_001357_040--Hb_000931_020 Hb_012395_170--Hb_005276_060 Hb_084247_010 Hb_084247_010 Hb_012395_170--Hb_084247_010 Hb_003929_170 Hb_003929_170 Hb_012395_170--Hb_003929_170 Hb_001124_010 Hb_001124_010 Hb_012395_170--Hb_001124_010 Hb_012395_170--Hb_000390_250 Hb_005276_060--Hb_084247_010 Hb_000009_400 Hb_000009_400 Hb_005276_060--Hb_000009_400 Hb_001016_050 Hb_001016_050 Hb_005276_060--Hb_001016_050 Hb_005276_060--Hb_003929_170 Hb_000322_070--Hb_000009_400 Hb_000046_570 Hb_000046_570 Hb_000322_070--Hb_000046_570 Hb_162060_010 Hb_162060_010 Hb_000322_070--Hb_162060_010 Hb_008253_020 Hb_008253_020 Hb_000322_070--Hb_008253_020 Hb_000322_070--Hb_000390_250 Hb_000072_120--Hb_001473_160 Hb_000072_120--Hb_003906_200 Hb_000072_120--Hb_001674_030 Hb_004030_080 Hb_004030_080 Hb_000072_120--Hb_004030_080 Hb_001679_050 Hb_001679_050 Hb_000072_120--Hb_001679_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.18652 12.2547 8.16294 20.0551 8.9143 10.5649
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.20477 7.55311 13.0497 6.78381 8.89803

CAGE analysis