Hb_003621_020

Information

Type transcription factor
Description TF Family: MYB-related
Location Contig3621: 20807-26011
Sequence    

Annotation

kegg
ID rcu:RCOM_1541510
description DNA binding protein, putative
nr
ID XP_012065468.1
description PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
swissprot
ID Q8S9H7
description Transcription factor DIVARICATA OS=Antirrhinum majus GN=DIVARICATA PE=2 SV=1
trembl
ID A0A067L5I9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24140 PE=4 SV=1
Gene Ontology
ID GO:0005634
description transcription factor divaricata-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003621_020 0.0 transcription factor TF Family: MYB-related PREDICTED: transcription factor DIVARICATA-like [Jatropha curcas]
2 Hb_153553_030 0.0748174823 - - PREDICTED: zinc finger protein GIS2 [Jatropha curcas]
3 Hb_000009_530 0.0859105068 - - PREDICTED: uncharacterized protein LOC105639628 [Jatropha curcas]
4 Hb_001898_240 0.0874398926 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
5 Hb_000638_290 0.0894609439 - - PREDICTED: 5' exonuclease Apollo [Jatropha curcas]
6 Hb_012016_010 0.0988250301 - - PREDICTED: glycine-rich RNA-binding protein 6, mitochondrial [Jatropha curcas]
7 Hb_180424_010 0.1040052146 - - Charged multivesicular body protein, putative [Ricinus communis]
8 Hb_000866_410 0.1051045206 - - hypothetical protein JCGZ_14422 [Jatropha curcas]
9 Hb_000610_010 0.1065406488 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
10 Hb_002228_110 0.1104099567 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
11 Hb_004093_090 0.1131821028 - - PREDICTED: uncharacterized protein LOC105633550 [Jatropha curcas]
12 Hb_000836_430 0.114640481 - - PREDICTED: pentatricopeptide repeat-containing protein At3g61520, mitochondrial-like [Jatropha curcas]
13 Hb_005588_030 0.1159511086 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
14 Hb_001671_040 0.1160024869 - - PREDICTED: serine/arginine-rich splicing factor RS31-like isoform X1 [Populus euphratica]
15 Hb_005137_050 0.1163886077 - - PREDICTED: nuclear pore complex protein NUP58 [Jatropha curcas]
16 Hb_004785_190 0.1176031253 - - PHD finger family protein [Populus trichocarpa]
17 Hb_002234_100 0.1188708529 - - F-box family protein, putative isoform 1 [Theobroma cacao]
18 Hb_006261_090 0.1205948214 - - PREDICTED: exosome complex exonuclease RRP46 homolog [Jatropha curcas]
19 Hb_004128_200 0.1209485812 - - PREDICTED: uncharacterized protein LOC105642137 [Jatropha curcas]
20 Hb_000853_430 0.1210368218 - - PREDICTED: uncharacterized protein LOC105642597 [Jatropha curcas]

Gene co-expression network

sample Hb_003621_020 Hb_003621_020 Hb_153553_030 Hb_153553_030 Hb_003621_020--Hb_153553_030 Hb_000009_530 Hb_000009_530 Hb_003621_020--Hb_000009_530 Hb_001898_240 Hb_001898_240 Hb_003621_020--Hb_001898_240 Hb_000638_290 Hb_000638_290 Hb_003621_020--Hb_000638_290 Hb_012016_010 Hb_012016_010 Hb_003621_020--Hb_012016_010 Hb_180424_010 Hb_180424_010 Hb_003621_020--Hb_180424_010 Hb_002600_020 Hb_002600_020 Hb_153553_030--Hb_002600_020 Hb_005588_030 Hb_005588_030 Hb_153553_030--Hb_005588_030 Hb_000866_410 Hb_000866_410 Hb_153553_030--Hb_000866_410 Hb_153553_030--Hb_000638_290 Hb_153553_030--Hb_000009_530 Hb_000610_010 Hb_000610_010 Hb_000009_530--Hb_000610_010 Hb_000286_070 Hb_000286_070 Hb_000009_530--Hb_000286_070 Hb_003687_230 Hb_003687_230 Hb_000009_530--Hb_003687_230 Hb_004093_090 Hb_004093_090 Hb_000009_530--Hb_004093_090 Hb_000144_100 Hb_000144_100 Hb_000009_530--Hb_000144_100 Hb_003292_040 Hb_003292_040 Hb_000009_530--Hb_003292_040 Hb_006261_090 Hb_006261_090 Hb_001898_240--Hb_006261_090 Hb_001864_070 Hb_001864_070 Hb_001898_240--Hb_001864_070 Hb_001898_240--Hb_000009_530 Hb_002228_110 Hb_002228_110 Hb_001898_240--Hb_002228_110 Hb_001898_240--Hb_000610_010 Hb_000638_290--Hb_004093_090 Hb_000638_290--Hb_012016_010 Hb_000638_290--Hb_000866_410 Hb_029142_060 Hb_029142_060 Hb_000638_290--Hb_029142_060 Hb_001998_120 Hb_001998_120 Hb_012016_010--Hb_001998_120 Hb_012016_010--Hb_000009_530 Hb_012016_010--Hb_004093_090 Hb_000444_080 Hb_000444_080 Hb_012016_010--Hb_000444_080 Hb_000000_210 Hb_000000_210 Hb_180424_010--Hb_000000_210 Hb_000853_430 Hb_000853_430 Hb_180424_010--Hb_000853_430 Hb_005488_140 Hb_005488_140 Hb_180424_010--Hb_005488_140 Hb_000856_380 Hb_000856_380 Hb_180424_010--Hb_000856_380 Hb_004410_080 Hb_004410_080 Hb_180424_010--Hb_004410_080 Hb_004678_040 Hb_004678_040 Hb_180424_010--Hb_004678_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.24696 5.58023 7.71003 2.21704 5.05076 3.80622
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.74764 7.70682 3.35628 1.80075 2.32643

CAGE analysis