Hb_003622_030

Information

Type -
Description -
Location Contig3622: 31090-35662
Sequence    

Annotation

kegg
ID pop:POPTR_0006s04470g
description POPTRDRAFT_801798; hypothetical protein
nr
ID XP_012085993.1
description PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
swissprot
ID Q96CS2
description HAUS augmin-like complex subunit 1 OS=Homo sapiens GN=HAUS1 PE=1 SV=1
trembl
ID A0A067JTY9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22484 PE=4 SV=1
Gene Ontology
ID GO:0070652
description haus augmin-like complex subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37224: 31087-35655
cDNA
(Sanger)
(ID:Location)		 032_J23.ab1: 31087-32202

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003622_030 0.0 - - PREDICTED: HAUS augmin-like complex subunit 1 [Jatropha curcas]
2 Hb_012799_170 0.0661328045 - - PREDICTED: protein GLC8 isoform X2 [Jatropha curcas]
3 Hb_002540_080 0.0687399304 - - cysteine-type peptidase, putative [Ricinus communis]
4 Hb_014720_110 0.0827025591 - - PREDICTED: GDSL esterase/lipase At5g62930 [Tarenaya hassleriana]
5 Hb_000566_120 0.0832828605 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]
6 Hb_002968_040 0.0845844625 - - PREDICTED: 26S protease regulatory subunit 7-like [Jatropha curcas]
7 Hb_011457_050 0.0880362644 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
8 Hb_000827_050 0.0891354839 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
9 Hb_010361_010 0.0911643574 - - PREDICTED: ras-related protein RABH1b [Jatropha curcas]
10 Hb_026889_030 0.0923502155 - - protein with unknown function [Ricinus communis]
11 Hb_000676_390 0.0936180714 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
12 Hb_005446_010 0.0936364259 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
13 Hb_006573_190 0.0953773639 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
14 Hb_001575_060 0.0960204366 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
15 Hb_001322_110 0.0966180109 - - conserved hypothetical protein [Ricinus communis]
16 Hb_024650_070 0.0987198253 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A-like [Jatropha curcas]
17 Hb_000853_190 0.099486221 - - mitochondrial carrier protein, putative [Ricinus communis]
18 Hb_001329_150 0.1005934929 - - PREDICTED: autophagy-related protein 8i-like [Jatropha curcas]
19 Hb_017225_020 0.1009569748 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
20 Hb_000329_200 0.1025906847 - - PREDICTED: uncharacterized protein LOC105639316 [Jatropha curcas]

Gene co-expression network

sample Hb_003622_030 Hb_003622_030 Hb_012799_170 Hb_012799_170 Hb_003622_030--Hb_012799_170 Hb_002540_080 Hb_002540_080 Hb_003622_030--Hb_002540_080 Hb_014720_110 Hb_014720_110 Hb_003622_030--Hb_014720_110 Hb_000566_120 Hb_000566_120 Hb_003622_030--Hb_000566_120 Hb_002968_040 Hb_002968_040 Hb_003622_030--Hb_002968_040 Hb_011457_050 Hb_011457_050 Hb_003622_030--Hb_011457_050 Hb_005167_010 Hb_005167_010 Hb_012799_170--Hb_005167_010 Hb_012799_170--Hb_000566_120 Hb_001322_110 Hb_001322_110 Hb_012799_170--Hb_001322_110 Hb_001195_060 Hb_001195_060 Hb_012799_170--Hb_001195_060 Hb_012799_170--Hb_002540_080 Hb_000676_390 Hb_000676_390 Hb_002540_080--Hb_000676_390 Hb_026889_030 Hb_026889_030 Hb_002540_080--Hb_026889_030 Hb_000160_180 Hb_000160_180 Hb_002540_080--Hb_000160_180 Hb_001318_260 Hb_001318_260 Hb_002540_080--Hb_001318_260 Hb_006573_190 Hb_006573_190 Hb_014720_110--Hb_006573_190 Hb_003678_020 Hb_003678_020 Hb_014720_110--Hb_003678_020 Hb_001828_150 Hb_001828_150 Hb_014720_110--Hb_001828_150 Hb_004586_420 Hb_004586_420 Hb_014720_110--Hb_004586_420 Hb_000920_200 Hb_000920_200 Hb_014720_110--Hb_000920_200 Hb_000045_310 Hb_000045_310 Hb_000566_120--Hb_000045_310 Hb_000566_120--Hb_006573_190 Hb_001931_010 Hb_001931_010 Hb_000566_120--Hb_001931_010 Hb_010361_010 Hb_010361_010 Hb_000566_120--Hb_010361_010 Hb_000390_300 Hb_000390_300 Hb_000566_120--Hb_000390_300 Hb_005843_140 Hb_005843_140 Hb_002968_040--Hb_005843_140 Hb_000946_090 Hb_000946_090 Hb_002968_040--Hb_000946_090 Hb_002968_040--Hb_012799_170 Hb_044653_040 Hb_044653_040 Hb_002968_040--Hb_044653_040 Hb_006355_040 Hb_006355_040 Hb_002968_040--Hb_006355_040 Hb_004324_270 Hb_004324_270 Hb_011457_050--Hb_004324_270 Hb_002408_020 Hb_002408_020 Hb_011457_050--Hb_002408_020 Hb_003768_030 Hb_003768_030 Hb_011457_050--Hb_003768_030 Hb_000061_210 Hb_000061_210 Hb_011457_050--Hb_000061_210 Hb_011457_050--Hb_000566_120 Hb_002183_060 Hb_002183_060 Hb_011457_050--Hb_002183_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.42491 3.45034 18.9505 14.2864 10.0952 8.21716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.1524 30.9562 20.9402 14.1775 17.645

CAGE analysis