Hb_003622_050

Information

Type -
Description -
Location Contig3622: 101802-112030
Sequence    

Annotation

kegg
ID pmum:103338602
description respiratory burst oxidase homolog protein F-like
nr
ID XP_012086005.1
description PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
swissprot
ID O48538
description Respiratory burst oxidase homolog protein F OS=Arabidopsis thaliana GN=RBOHF PE=1 SV=1
trembl
ID A0A067K389
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22480 PE=4 SV=1
Gene Ontology
ID GO:0016021
description respiratory burst oxidase homolog protein a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37225: 102733-103034 , PASA_asmbl_37226: 103199-104351 , PASA_asmbl_37227: 105107-109687
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003622_050 0.0 - - PREDICTED: respiratory burst oxidase homolog protein A-like [Jatropha curcas]
2 Hb_000645_270 0.0582969886 - - PREDICTED: uncharacterized protein LOC105122837 isoform X2 [Populus euphratica]
3 Hb_031194_020 0.0653711603 - - BnaCnng13030D [Brassica napus]
4 Hb_000844_060 0.0736322653 - - PREDICTED: uncharacterized protein LOC105633706 [Jatropha curcas]
5 Hb_001080_290 0.0752804899 - - PSI reaction center subunit II [Citrus sinensis]
6 Hb_002600_110 0.0761447624 - - hypothetical protein POPTR_0004s10540g [Populus trichocarpa]
7 Hb_002188_150 0.0797393745 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001053_050 0.082335543 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Vitis vinifera]
9 Hb_183479_030 0.0824468196 - - Photosystem I reaction center subunit V, chloroplast precursor, putative [Ricinus communis]
10 Hb_001775_010 0.0884799724 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003253_030 0.0935531694 - - lysosomal pro-X carboxypeptidase, putative [Ricinus communis]
12 Hb_077976_010 0.0947500338 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
13 Hb_007101_090 0.0963287397 - - PREDICTED: protein ALTERED XYLOGLUCAN 4 [Jatropha curcas]
14 Hb_169492_010 0.097629583 - - PREDICTED: expansin-like B1 [Jatropha curcas]
15 Hb_003947_020 0.0983846997 - - Serine/threonine-protein kinase-transforming protein raf, putative [Ricinus communis]
16 Hb_001140_110 0.0986312623 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
17 Hb_000768_080 0.0995985139 - - Mlo protein [Hevea brasiliensis]
18 Hb_003952_030 0.1008239899 - - hypothetical protein JCGZ_16620 [Jatropha curcas]
19 Hb_001951_050 0.1008241023 - - chlorophyll A/B binding protein, putative [Ricinus communis]
20 Hb_000940_120 0.1033351659 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]

Gene co-expression network

sample Hb_003622_050 Hb_003622_050 Hb_000645_270 Hb_000645_270 Hb_003622_050--Hb_000645_270 Hb_031194_020 Hb_031194_020 Hb_003622_050--Hb_031194_020 Hb_000844_060 Hb_000844_060 Hb_003622_050--Hb_000844_060 Hb_001080_290 Hb_001080_290 Hb_003622_050--Hb_001080_290 Hb_002600_110 Hb_002600_110 Hb_003622_050--Hb_002600_110 Hb_002188_150 Hb_002188_150 Hb_003622_050--Hb_002188_150 Hb_000645_270--Hb_031194_020 Hb_007101_090 Hb_007101_090 Hb_000645_270--Hb_007101_090 Hb_003947_020 Hb_003947_020 Hb_000645_270--Hb_003947_020 Hb_052139_010 Hb_052139_010 Hb_000645_270--Hb_052139_010 Hb_009095_020 Hb_009095_020 Hb_000645_270--Hb_009095_020 Hb_031194_020--Hb_052139_010 Hb_000000_090 Hb_000000_090 Hb_031194_020--Hb_000000_090 Hb_031194_020--Hb_007101_090 Hb_031194_020--Hb_000844_060 Hb_003253_030 Hb_003253_030 Hb_000844_060--Hb_003253_030 Hb_000844_060--Hb_000645_270 Hb_001999_330 Hb_001999_330 Hb_000844_060--Hb_001999_330 Hb_000844_060--Hb_002600_110 Hb_001951_050 Hb_001951_050 Hb_001080_290--Hb_001951_050 Hb_001140_110 Hb_001140_110 Hb_001080_290--Hb_001140_110 Hb_077976_010 Hb_077976_010 Hb_001080_290--Hb_077976_010 Hb_001775_010 Hb_001775_010 Hb_001080_290--Hb_001775_010 Hb_042123_010 Hb_042123_010 Hb_001080_290--Hb_042123_010 Hb_001097_110 Hb_001097_110 Hb_001080_290--Hb_001097_110 Hb_183479_030 Hb_183479_030 Hb_002600_110--Hb_183479_030 Hb_000768_080 Hb_000768_080 Hb_002600_110--Hb_000768_080 Hb_048694_010 Hb_048694_010 Hb_002600_110--Hb_048694_010 Hb_002600_110--Hb_001775_010 Hb_002600_110--Hb_001080_290 Hb_002445_020 Hb_002445_020 Hb_002600_110--Hb_002445_020 Hb_169492_010 Hb_169492_010 Hb_002188_150--Hb_169492_010 Hb_001053_050 Hb_001053_050 Hb_002188_150--Hb_001053_050 Hb_002188_150--Hb_001775_010 Hb_002188_150--Hb_077976_010 Hb_001146_030 Hb_001146_030 Hb_002188_150--Hb_001146_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0894063 1.39321 2.80003 0 0.00892533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0212151 0 0 0.33189 18.48

CAGE analysis