Hb_003623_030

Information

Type -
Description -
Location Contig3623: 15760-21197
Sequence    

Annotation

kegg
ID pxb:103940757
description DEAD-box ATP-dependent RNA helicase 46-like
nr
ID XP_012084331.1
description PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
swissprot
ID Q9SQV1
description DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1
trembl
ID A0A067K7F3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19832 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 40

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37228: 14478-16521 , PASA_asmbl_37229: 16577-21553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003623_030 0.0 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 14 [Jatropha curcas]
2 Hb_002551_070 0.0663637555 - - hypothetical protein POPTR_0019s10130g [Populus trichocarpa]
3 Hb_002028_170 0.0686093575 - - PREDICTED: brefeldin A-inhibited guanine nucleotide-exchange protein 5 [Jatropha curcas]
4 Hb_000107_040 0.0693406687 - - nuclear pore complex protein nup153, putative [Ricinus communis]
5 Hb_000158_100 0.0769380558 - - conserved hypothetical protein [Ricinus communis]
6 Hb_116929_010 0.0772803251 - - PREDICTED: nuclear-pore anchor isoform X2 [Jatropha curcas]
7 Hb_032631_040 0.0803746849 - - PREDICTED: uncharacterized protein LOC105638769 [Jatropha curcas]
8 Hb_002471_210 0.0849929117 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
9 Hb_002291_070 0.0851711594 - - PREDICTED: dentin sialophosphoprotein [Prunus mume]
10 Hb_029142_010 0.0876808208 - - PREDICTED: H/ACA ribonucleoprotein complex subunit 4 [Jatropha curcas]
11 Hb_001322_210 0.0883725051 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Jatropha curcas]
12 Hb_005494_020 0.0885549963 - - PREDICTED: transmembrane protein 184 homolog DDB_G0279555 [Jatropha curcas]
13 Hb_000136_060 0.0896595724 - - hypothetical protein POPTR_0016s06250g [Populus trichocarpa]
14 Hb_002974_060 0.0898548218 - - PREDICTED: transcription initiation factor TFIID subunit 15b isoform X2 [Jatropha curcas]
15 Hb_000743_050 0.0901379666 - - unnamed protein product [Vitis vinifera]
16 Hb_000997_030 0.0911307153 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
17 Hb_000023_060 0.0916695785 - - PREDICTED: uncharacterized protein LOC105633775 [Jatropha curcas]
18 Hb_003428_070 0.0921915269 - - DEAD-box ATP-dependent RNA helicase 46 -like protein [Gossypium arboreum]
19 Hb_011716_020 0.0930310264 - - PREDICTED: uncharacterized protein LOC105637783 [Jatropha curcas]
20 Hb_000347_130 0.0940630729 - - PREDICTED: nuclear pore complex protein NUP107 [Jatropha curcas]

Gene co-expression network

sample Hb_003623_030 Hb_003623_030 Hb_002551_070 Hb_002551_070 Hb_003623_030--Hb_002551_070 Hb_002028_170 Hb_002028_170 Hb_003623_030--Hb_002028_170 Hb_000107_040 Hb_000107_040 Hb_003623_030--Hb_000107_040 Hb_000158_100 Hb_000158_100 Hb_003623_030--Hb_000158_100 Hb_116929_010 Hb_116929_010 Hb_003623_030--Hb_116929_010 Hb_032631_040 Hb_032631_040 Hb_003623_030--Hb_032631_040 Hb_002551_070--Hb_032631_040 Hb_002974_060 Hb_002974_060 Hb_002551_070--Hb_002974_060 Hb_003966_030 Hb_003966_030 Hb_002551_070--Hb_003966_030 Hb_000183_020 Hb_000183_020 Hb_002551_070--Hb_000183_020 Hb_048476_180 Hb_048476_180 Hb_002551_070--Hb_048476_180 Hb_011716_020 Hb_011716_020 Hb_002028_170--Hb_011716_020 Hb_002028_170--Hb_000158_100 Hb_000136_060 Hb_000136_060 Hb_002028_170--Hb_000136_060 Hb_007904_220 Hb_007904_220 Hb_002028_170--Hb_007904_220 Hb_000343_030 Hb_000343_030 Hb_002028_170--Hb_000343_030 Hb_000997_030 Hb_000997_030 Hb_000107_040--Hb_000997_030 Hb_029142_010 Hb_029142_010 Hb_000107_040--Hb_029142_010 Hb_000023_060 Hb_000023_060 Hb_000107_040--Hb_000023_060 Hb_030565_090 Hb_030565_090 Hb_000107_040--Hb_030565_090 Hb_000264_100 Hb_000264_100 Hb_000107_040--Hb_000264_100 Hb_000743_050 Hb_000743_050 Hb_000158_100--Hb_000743_050 Hb_000158_100--Hb_000136_060 Hb_000739_220 Hb_000739_220 Hb_000158_100--Hb_000739_220 Hb_001900_110 Hb_001900_110 Hb_000158_100--Hb_001900_110 Hb_002301_080 Hb_002301_080 Hb_116929_010--Hb_002301_080 Hb_148909_030 Hb_148909_030 Hb_116929_010--Hb_148909_030 Hb_002400_240 Hb_002400_240 Hb_116929_010--Hb_002400_240 Hb_003044_020 Hb_003044_020 Hb_116929_010--Hb_003044_020 Hb_116929_010--Hb_000183_020 Hb_117552_010 Hb_117552_010 Hb_032631_040--Hb_117552_010 Hb_009476_040 Hb_009476_040 Hb_032631_040--Hb_009476_040 Hb_032631_040--Hb_002974_060 Hb_005701_070 Hb_005701_070 Hb_032631_040--Hb_005701_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.1331 21.5635 5.50897 8.03662 25.1957 42.4941
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.0094 8.99826 11.3582 22.7619 16.7627

CAGE analysis