Hb_003623_050

Information

Type -
Description -
Location Contig3623: 40005-49940
Sequence    

Annotation

kegg
ID rcu:RCOM_1130850
description hypothetical protein
nr
ID XP_002518839.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RYM0
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1130850 PE=4 SV=1
Gene Ontology
ID GO:0010181
description pyridoxamine 5 -phosphate oxidase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37232: 40221-49916
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003623_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000136_170 0.0689036377 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
3 Hb_005357_130 0.074958256 - - hypothetical protein L484_012905 [Morus notabilis]
4 Hb_026048_070 0.0776558518 - - PREDICTED: uncharacterized protein LOC105645736 [Jatropha curcas]
5 Hb_000086_550 0.0796008653 - - Os02g0814700 [Oryza sativa Japonica Group]
6 Hb_011644_030 0.0831021945 - - PREDICTED: 50S ribosomal protein L12, cyanelle-like [Pyrus x bretschneideri]
7 Hb_001505_020 0.0832075255 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
8 Hb_009421_040 0.0839741375 - - PREDICTED: eukaryotic initiation factor 4A [Jatropha curcas]
9 Hb_002713_070 0.0873437233 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
10 Hb_012265_010 0.088794252 - - hypothetical protein CISIN_1g026883mg [Citrus sinensis]
11 Hb_089839_020 0.0889555084 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
12 Hb_001009_300 0.0920410499 transcription factor TF Family: GNAT PREDICTED: elongator complex protein 3-like [Gossypium raimondii]
13 Hb_006816_530 0.0921490039 - - 60S ribosomal protein L18, putative [Ricinus communis]
14 Hb_001279_360 0.0922800502 - - protein with unknown function [Ricinus communis]
15 Hb_003994_040 0.092445266 - - -
16 Hb_000024_030 0.0933241822 - - PREDICTED: tetratricopeptide repeat protein 5-like [Populus euphratica]
17 Hb_001433_050 0.0933488958 - - 60S ribosomal protein L18, putative [Ricinus communis]
18 Hb_004375_100 0.0944965025 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
19 Hb_000134_070 0.0969347903 - - 60S ribosomal protein L6, putative [Ricinus communis]
20 Hb_010812_010 0.0976513491 - - hypothetical protein JCGZ_03306 [Jatropha curcas]

Gene co-expression network

sample Hb_003623_050 Hb_003623_050 Hb_000136_170 Hb_000136_170 Hb_003623_050--Hb_000136_170 Hb_005357_130 Hb_005357_130 Hb_003623_050--Hb_005357_130 Hb_026048_070 Hb_026048_070 Hb_003623_050--Hb_026048_070 Hb_000086_550 Hb_000086_550 Hb_003623_050--Hb_000086_550 Hb_011644_030 Hb_011644_030 Hb_003623_050--Hb_011644_030 Hb_001505_020 Hb_001505_020 Hb_003623_050--Hb_001505_020 Hb_002713_070 Hb_002713_070 Hb_000136_170--Hb_002713_070 Hb_000134_070 Hb_000134_070 Hb_000136_170--Hb_000134_070 Hb_000136_170--Hb_001505_020 Hb_000265_050 Hb_000265_050 Hb_000136_170--Hb_000265_050 Hb_004567_120 Hb_004567_120 Hb_000136_170--Hb_004567_120 Hb_005357_130--Hb_000086_550 Hb_009421_040 Hb_009421_040 Hb_005357_130--Hb_009421_040 Hb_012022_120 Hb_012022_120 Hb_005357_130--Hb_012022_120 Hb_006541_010 Hb_006541_010 Hb_005357_130--Hb_006541_010 Hb_006816_210 Hb_006816_210 Hb_005357_130--Hb_006816_210 Hb_026048_070--Hb_011644_030 Hb_001016_090 Hb_001016_090 Hb_026048_070--Hb_001016_090 Hb_003053_030 Hb_003053_030 Hb_026048_070--Hb_003053_030 Hb_148200_010 Hb_148200_010 Hb_026048_070--Hb_148200_010 Hb_001279_360 Hb_001279_360 Hb_026048_070--Hb_001279_360 Hb_000340_140 Hb_000340_140 Hb_000086_550--Hb_000340_140 Hb_004032_100 Hb_004032_100 Hb_000086_550--Hb_004032_100 Hb_000364_020 Hb_000364_020 Hb_000086_550--Hb_000364_020 Hb_006816_530 Hb_006816_530 Hb_000086_550--Hb_006816_530 Hb_011161_050 Hb_011161_050 Hb_000086_550--Hb_011161_050 Hb_011644_030--Hb_006541_010 Hb_011644_030--Hb_004567_120 Hb_003994_040 Hb_003994_040 Hb_011644_030--Hb_003994_040 Hb_011644_030--Hb_000136_170 Hb_000364_030 Hb_000364_030 Hb_011644_030--Hb_000364_030 Hb_001505_020--Hb_006816_530 Hb_001505_020--Hb_002713_070 Hb_001433_050 Hb_001433_050 Hb_001505_020--Hb_001433_050 Hb_000227_230 Hb_000227_230 Hb_001505_020--Hb_000227_230 Hb_001814_050 Hb_001814_050 Hb_001505_020--Hb_001814_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.72929 3.41048 3.4802 8.08351 9.56011 19.8734
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.2246 43.3015 17.1425 14.0234 9.52097

CAGE analysis