Hb_003623_070

Information

Type -
Description -
Location Contig3623: 57773-62728
Sequence    

Annotation

kegg
ID rcu:RCOM_1130800
description ubiquitin-protein ligase, putative
nr
ID XP_002518834.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID Q9C8K7
description F-box/kelch-repeat protein At1g51550 OS=Arabidopsis thaliana GN=At1g51550 PE=2 SV=1
trembl
ID B9RYL5
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1130800 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box kelch-repeat protein at1g51550

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37235: 58057-62257
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003623_070 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_000140_410 0.1542486235 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
3 Hb_001269_690 0.156539409 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004788_040 0.1586041811 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_001529_050 0.158842847 - - PREDICTED: ribulose bisphosphate carboxylase small chain clone 512-like [Jatropha curcas]
6 Hb_001635_050 0.161995894 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 7, mitochondrial [Nicotiana sylvestris]
7 Hb_002273_050 0.1698918592 - - PREDICTED: geranylgeranyl diphosphate reductase, chloroplastic-like [Jatropha curcas]
8 Hb_001433_180 0.1732146765 - - hypothetical protein JCGZ_23261 [Jatropha curcas]
9 Hb_002273_080 0.1738540382 - - geranylgeranyl reductase [Monoraphidium neglectum]
10 Hb_020805_170 0.1778543528 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
11 Hb_007382_050 0.1891524002 - - PREDICTED: uncharacterized protein LOC105645009 [Jatropha curcas]
12 Hb_000215_410 0.1893864834 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
13 Hb_013818_040 0.1900561806 - - PREDICTED: pleckstrin homology domain-containing family A member 8 [Jatropha curcas]
14 Hb_129204_060 0.2099154658 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 20 [Jatropha curcas]
15 Hb_000390_100 0.2112983028 - - alpha-hydroxynitrile lyase family protein [Populus trichocarpa]
16 Hb_008066_070 0.2113839195 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
17 Hb_000836_120 0.2134493221 - - syntaxin, putative [Ricinus communis]
18 Hb_000227_060 0.2149809376 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
19 Hb_001104_240 0.2157686072 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
20 Hb_000905_170 0.2172363243 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]

Gene co-expression network

sample Hb_003623_070 Hb_003623_070 Hb_000140_410 Hb_000140_410 Hb_003623_070--Hb_000140_410 Hb_001269_690 Hb_001269_690 Hb_003623_070--Hb_001269_690 Hb_004788_040 Hb_004788_040 Hb_003623_070--Hb_004788_040 Hb_001529_050 Hb_001529_050 Hb_003623_070--Hb_001529_050 Hb_001635_050 Hb_001635_050 Hb_003623_070--Hb_001635_050 Hb_002273_050 Hb_002273_050 Hb_003623_070--Hb_002273_050 Hb_000140_410--Hb_001269_690 Hb_008066_070 Hb_008066_070 Hb_000140_410--Hb_008066_070 Hb_020805_170 Hb_020805_170 Hb_000140_410--Hb_020805_170 Hb_000905_170 Hb_000905_170 Hb_000140_410--Hb_000905_170 Hb_000140_410--Hb_001529_050 Hb_000200_280 Hb_000200_280 Hb_001269_690--Hb_000200_280 Hb_001269_690--Hb_001529_050 Hb_001269_690--Hb_002273_050 Hb_000227_060 Hb_000227_060 Hb_001269_690--Hb_000227_060 Hb_001104_240 Hb_001104_240 Hb_001269_690--Hb_001104_240 Hb_004788_040--Hb_001635_050 Hb_004788_040--Hb_001269_690 Hb_004788_040--Hb_000140_410 Hb_004788_040--Hb_001529_050 Hb_004788_040--Hb_001104_240 Hb_001529_050--Hb_001104_240 Hb_138585_110 Hb_138585_110 Hb_001529_050--Hb_138585_110 Hb_000086_660 Hb_000086_660 Hb_001529_050--Hb_000086_660 Hb_002273_090 Hb_002273_090 Hb_001635_050--Hb_002273_090 Hb_002273_060 Hb_002273_060 Hb_001635_050--Hb_002273_060 Hb_002273_080 Hb_002273_080 Hb_001635_050--Hb_002273_080 Hb_001635_050--Hb_002273_050 Hb_002273_050--Hb_002273_080 Hb_000215_410 Hb_000215_410 Hb_002273_050--Hb_000215_410 Hb_000836_120 Hb_000836_120 Hb_002273_050--Hb_000836_120 Hb_002686_280 Hb_002686_280 Hb_002273_050--Hb_002686_280 Hb_129204_060 Hb_129204_060 Hb_002273_050--Hb_129204_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.3044 104.251 3.07654 7.07147 12.5165 17.9952
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.8853 13.634 13.5028 87.6343 5.50995

CAGE analysis