Hb_003623_080

Information

Type -
Description -
Location Contig3623: 67063-68826
Sequence    

Annotation

kegg
ID pop:POPTR_0019s09230g
description hypothetical protein
nr
ID XP_010999521.1
description PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
swissprot
ID Q9FFZ1
description Pheophytinase, chloroplastic OS=Arabidopsis thaliana GN=PPH PE=1 SV=1
trembl
ID A9PIY6
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0009534
description alpha beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37236: 67030-73872
cDNA
(Sanger)
(ID:Location)		 026_O05.ab1: 67965-73792

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003623_080 0.0 - - PREDICTED: pheophytinase, chloroplastic [Populus euphratica]
2 Hb_002272_210 0.03691464 - - PREDICTED: UPF0603 protein At1g54780, chloroplastic [Jatropha curcas]
3 Hb_008225_050 0.0638462853 - - hypothetical protein PRUPE_ppa004332mg [Prunus persica]
4 Hb_001006_040 0.0642045977 - - PREDICTED: pentatricopeptide repeat-containing protein At5g13770, chloroplastic-like isoform X1 [Populus euphratica]
5 Hb_000254_130 0.066996677 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
6 Hb_001488_230 0.0695798245 - - PREDICTED: serine carboxypeptidase-like 25 isoform X2 [Populus euphratica]
7 Hb_146225_020 0.0707805523 - - chlorophyll A/B binding protein, putative [Ricinus communis]
8 Hb_002752_020 0.0708798309 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
9 Hb_002028_020 0.072171971 - - acyltransferase, putative [Ricinus communis]
10 Hb_000042_280 0.0728130048 - - chlorophyll A/B binding protein, putative [Ricinus communis]
11 Hb_001975_100 0.0741361346 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
12 Hb_000608_270 0.0751399461 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008195_070 0.0754562504 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
14 Hb_001343_030 0.0770404545 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit N, chloroplastic [Jatropha curcas]
15 Hb_007537_040 0.0773123117 - - PREDICTED: uncharacterized protein LOC105803495 [Gossypium raimondii]
16 Hb_003025_160 0.0774127378 - - Protein HVA22, putative [Ricinus communis]
17 Hb_001975_120 0.0775460828 - - chlorophyll a/b binding protein type II [Glycine max]
18 Hb_007597_030 0.0780548017 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001292_030 0.0783340286 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]
20 Hb_001159_050 0.0793293218 - - PREDICTED: uncharacterized protein LOC105645952 [Jatropha curcas]

Gene co-expression network

sample Hb_003623_080 Hb_003623_080 Hb_002272_210 Hb_002272_210 Hb_003623_080--Hb_002272_210 Hb_008225_050 Hb_008225_050 Hb_003623_080--Hb_008225_050 Hb_001006_040 Hb_001006_040 Hb_003623_080--Hb_001006_040 Hb_000254_130 Hb_000254_130 Hb_003623_080--Hb_000254_130 Hb_001488_230 Hb_001488_230 Hb_003623_080--Hb_001488_230 Hb_146225_020 Hb_146225_020 Hb_003623_080--Hb_146225_020 Hb_001343_030 Hb_001343_030 Hb_002272_210--Hb_001343_030 Hb_007597_030 Hb_007597_030 Hb_002272_210--Hb_007597_030 Hb_002272_210--Hb_001006_040 Hb_002272_210--Hb_146225_020 Hb_001975_120 Hb_001975_120 Hb_002272_210--Hb_001975_120 Hb_007537_040 Hb_007537_040 Hb_008225_050--Hb_007537_040 Hb_008225_050--Hb_000254_130 Hb_003025_160 Hb_003025_160 Hb_008225_050--Hb_003025_160 Hb_002752_020 Hb_002752_020 Hb_008225_050--Hb_002752_020 Hb_004970_060 Hb_004970_060 Hb_008225_050--Hb_004970_060 Hb_001975_100 Hb_001975_100 Hb_008225_050--Hb_001975_100 Hb_002785_030 Hb_002785_030 Hb_001006_040--Hb_002785_030 Hb_001292_030 Hb_001292_030 Hb_001006_040--Hb_001292_030 Hb_001006_040--Hb_001975_100 Hb_001322_120 Hb_001322_120 Hb_001006_040--Hb_001322_120 Hb_005063_030 Hb_005063_030 Hb_001006_040--Hb_005063_030 Hb_001028_040 Hb_001028_040 Hb_001006_040--Hb_001028_040 Hb_000254_130--Hb_001975_100 Hb_001999_230 Hb_001999_230 Hb_000254_130--Hb_001999_230 Hb_000254_130--Hb_003025_160 Hb_000254_130--Hb_005063_030 Hb_000254_130--Hb_002752_020 Hb_002028_020 Hb_002028_020 Hb_001488_230--Hb_002028_020 Hb_000042_280 Hb_000042_280 Hb_001488_230--Hb_000042_280 Hb_009588_010 Hb_009588_010 Hb_001488_230--Hb_009588_010 Hb_000418_130 Hb_000418_130 Hb_001488_230--Hb_000418_130 Hb_149644_030 Hb_149644_030 Hb_001488_230--Hb_149644_030 Hb_004032_400 Hb_004032_400 Hb_001488_230--Hb_004032_400 Hb_000719_030 Hb_000719_030 Hb_146225_020--Hb_000719_030 Hb_001135_310 Hb_001135_310 Hb_146225_020--Hb_001135_310 Hb_013726_060 Hb_013726_060 Hb_146225_020--Hb_013726_060 Hb_001675_090 Hb_001675_090 Hb_146225_020--Hb_001675_090 Hb_000531_100 Hb_000531_100 Hb_146225_020--Hb_000531_100 Hb_001571_100 Hb_001571_100 Hb_146225_020--Hb_001571_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.80703 21.2978 10.6083 0.0786072 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0943051 0.0370873 0 0.10426 27.0428

CAGE analysis