Hb_003626_020

Information

Type -
Description -
Location Contig3626: 11128-13567
Sequence    

Annotation

kegg
ID tcc:TCM_028769
description Serine-threonine protein kinase, plant-type, putative
nr
ID XP_012081576.1
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
swissprot
ID C0LGX1
description Probable LRR receptor-like serine/threonine-protein kinase At5g65240 OS=Arabidopsis thaliana GN=At5g65240 PE=2 SV=1
trembl
ID A0A067KDD8
description Serine/threonine-protein kinase OS=Jatropha curcas GN=JCGZ_18439 PE=3 SV=1
Gene Ontology
ID GO:0016020
description g-type lectin s-receptor-like serine threonine-protein kinase sd2-5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37238: 11998-12202 , PASA_asmbl_37239: 13243-13552
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003626_020 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
2 Hb_000205_180 0.0805341313 - - lipoxygenase, putative [Ricinus communis]
3 Hb_003992_130 0.0818176602 - - unnamed protein product [Vitis vinifera]
4 Hb_004607_020 0.0873387289 - - PREDICTED: E3 ubiquitin ligase BIG BROTHER-like [Jatropha curcas]
5 Hb_000035_150 0.0893599875 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 40 [Jatropha curcas]
6 Hb_027337_010 0.0944121053 - - Potassium transporter, putative [Ricinus communis]
7 Hb_001310_060 0.0990632455 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_007951_020 0.0990907835 - - cationic amino acid transporter 5 family protein [Populus trichocarpa]
9 Hb_002700_030 0.1005600035 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
10 Hb_002757_010 0.103716368 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
11 Hb_001284_070 0.1044530545 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000664_080 0.1063544564 - - PREDICTED: NADP-dependent malic enzyme isoform X2 [Jatropha curcas]
13 Hb_000343_010 0.1094703039 - - F3F9.11 [Arabidopsis thaliana]
14 Hb_004213_010 0.1127963645 - - UDP-glucosyltransferase, putative [Ricinus communis]
15 Hb_001153_160 0.1130752571 - - molybdopterin cofactor sulfurase, putative [Ricinus communis]
16 Hb_002170_060 0.1137610367 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
17 Hb_181744_010 0.1139434199 - - hypothetical protein JCGZ_06105 [Jatropha curcas]
18 Hb_002081_060 0.1157494683 - - cyclin d, putative [Ricinus communis]
19 Hb_007643_060 0.1169098758 - - -
20 Hb_000077_300 0.1179745723 - - PREDICTED: expansin-B3-like [Jatropha curcas]

Gene co-expression network

sample Hb_003626_020 Hb_003626_020 Hb_000205_180 Hb_000205_180 Hb_003626_020--Hb_000205_180 Hb_003992_130 Hb_003992_130 Hb_003626_020--Hb_003992_130 Hb_004607_020 Hb_004607_020 Hb_003626_020--Hb_004607_020 Hb_000035_150 Hb_000035_150 Hb_003626_020--Hb_000035_150 Hb_027337_010 Hb_027337_010 Hb_003626_020--Hb_027337_010 Hb_001310_060 Hb_001310_060 Hb_003626_020--Hb_001310_060 Hb_001369_550 Hb_001369_550 Hb_000205_180--Hb_001369_550 Hb_000205_180--Hb_001310_060 Hb_001284_070 Hb_001284_070 Hb_000205_180--Hb_001284_070 Hb_002757_010 Hb_002757_010 Hb_000205_180--Hb_002757_010 Hb_002700_030 Hb_002700_030 Hb_000205_180--Hb_002700_030 Hb_003992_130--Hb_000035_150 Hb_004213_010 Hb_004213_010 Hb_003992_130--Hb_004213_010 Hb_001153_160 Hb_001153_160 Hb_003992_130--Hb_001153_160 Hb_003992_130--Hb_027337_010 Hb_108576_020 Hb_108576_020 Hb_003992_130--Hb_108576_020 Hb_004607_020--Hb_001284_070 Hb_004607_020--Hb_001310_060 Hb_080147_070 Hb_080147_070 Hb_004607_020--Hb_080147_070 Hb_004607_020--Hb_002700_030 Hb_004607_020--Hb_001369_550 Hb_007643_060 Hb_007643_060 Hb_000035_150--Hb_007643_060 Hb_007951_020 Hb_007951_020 Hb_000035_150--Hb_007951_020 Hb_006615_220 Hb_006615_220 Hb_000035_150--Hb_006615_220 Hb_000035_150--Hb_004213_010 Hb_002817_030 Hb_002817_030 Hb_027337_010--Hb_002817_030 Hb_002918_220 Hb_002918_220 Hb_027337_010--Hb_002918_220 Hb_001571_080 Hb_001571_080 Hb_027337_010--Hb_001571_080 Hb_005568_140 Hb_005568_140 Hb_027337_010--Hb_005568_140 Hb_001310_060--Hb_001284_070 Hb_001310_060--Hb_080147_070 Hb_001310_060--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_001310_060--Hb_000077_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0424143 0.775086 0.237263 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.12608 0.119186

CAGE analysis