Hb_003626_060

Information

Type -
Description -
Location Contig3626: 34366-54472
Sequence    

Annotation

kegg
ID pop:POPTR_0007s06560g
description hypothetical protein
nr
ID XP_012076891.1
description PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Jatropha curcas]
swissprot
ID O82188
description Probable RNA-dependent RNA polymerase 5 OS=Arabidopsis thaliana GN=RDR5 PE=2 SV=2
trembl
ID U5G7K9
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s06560g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37246: 34703-40863 , PASA_asmbl_37247: 42673-43660 , PASA_asmbl_37248: 43743-46563 , PASA_asmbl_37249: 45560-45714 , PASA_asmbl_37250: 47116-54198 , PASA_asmbl_37251: 54315-54470
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003626_060 0.0 - - PREDICTED: probable RNA-dependent RNA polymerase 5 isoform X1 [Jatropha curcas]
2 Hb_027405_020 0.1799720619 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
3 Hb_006501_060 0.1809293369 - - PREDICTED: lachrymatory-factor synthase-like [Jatropha curcas]
4 Hb_001922_130 0.181914504 - - hypothetical protein PHAVU_002G294300g [Phaseolus vulgaris]
5 Hb_000186_260 0.1830893327 transcription factor TF Family: PHD PREDICTED: protein polybromo-1-like [Jatropha curcas]
6 Hb_002659_060 0.1865630041 - - PREDICTED: SWI/SNF complex subunit SWI3B [Jatropha curcas]
7 Hb_004920_130 0.1870867421 transcription factor TF Family: SET unnamed protein product [Vitis vinifera]
8 Hb_010883_080 0.190417219 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHR1 isoform X1 [Jatropha curcas]
9 Hb_000016_280 0.1910928217 - - Arginine/serine-rich splicing factor 35 [Theobroma cacao]
10 Hb_002078_420 0.1911613881 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
11 Hb_006816_120 0.1939230371 - - Nicotianamine synthase, putative [Ricinus communis]
12 Hb_015763_020 0.1966427656 - - PREDICTED: uncharacterized protein LOC105637166 [Jatropha curcas]
13 Hb_000614_080 0.2001369086 - - -
14 Hb_032202_240 0.2002330874 - - PREDICTED: F-box protein At4g00755 [Jatropha curcas]
15 Hb_153150_010 0.2002761159 - - PREDICTED: serine/threonine-protein phosphatase PP2A-3 catalytic subunit [Eucalyptus grandis]
16 Hb_002626_040 0.2006485366 - - PREDICTED: inter-alpha-trypsin inhibitor heavy chain H3 isoform X1 [Jatropha curcas]
17 Hb_003125_060 0.2013033119 - - PREDICTED: snurportin-1 [Jatropha curcas]
18 Hb_000504_160 0.2025867487 - - hypothetical protein POPTR_0001s35340g [Populus trichocarpa]
19 Hb_000029_160 0.2044075411 - - Nitrilase, putative [Ricinus communis]
20 Hb_001473_080 0.2054197878 - - peroxisomal 3-keto-acyl-CoA thiolase [Hevea brasiliensis]

Gene co-expression network

sample Hb_003626_060 Hb_003626_060 Hb_027405_020 Hb_027405_020 Hb_003626_060--Hb_027405_020 Hb_006501_060 Hb_006501_060 Hb_003626_060--Hb_006501_060 Hb_001922_130 Hb_001922_130 Hb_003626_060--Hb_001922_130 Hb_000186_260 Hb_000186_260 Hb_003626_060--Hb_000186_260 Hb_002659_060 Hb_002659_060 Hb_003626_060--Hb_002659_060 Hb_004920_130 Hb_004920_130 Hb_003626_060--Hb_004920_130 Hb_003125_060 Hb_003125_060 Hb_027405_020--Hb_003125_060 Hb_003020_110 Hb_003020_110 Hb_027405_020--Hb_003020_110 Hb_000310_080 Hb_000310_080 Hb_027405_020--Hb_000310_080 Hb_000029_160 Hb_000029_160 Hb_027405_020--Hb_000029_160 Hb_000172_550 Hb_000172_550 Hb_027405_020--Hb_000172_550 Hb_023020_060 Hb_023020_060 Hb_027405_020--Hb_023020_060 Hb_000120_570 Hb_000120_570 Hb_006501_060--Hb_000120_570 Hb_002609_010 Hb_002609_010 Hb_006501_060--Hb_002609_010 Hb_001247_230 Hb_001247_230 Hb_006501_060--Hb_001247_230 Hb_010883_080 Hb_010883_080 Hb_006501_060--Hb_010883_080 Hb_001534_070 Hb_001534_070 Hb_006501_060--Hb_001534_070 Hb_000116_570 Hb_000116_570 Hb_006501_060--Hb_000116_570 Hb_001473_080 Hb_001473_080 Hb_001922_130--Hb_001473_080 Hb_001922_130--Hb_000120_570 Hb_001922_130--Hb_010883_080 Hb_004374_150 Hb_004374_150 Hb_001922_130--Hb_004374_150 Hb_001922_130--Hb_000116_570 Hb_001922_130--Hb_000186_260 Hb_000504_160 Hb_000504_160 Hb_000186_260--Hb_000504_160 Hb_000186_260--Hb_002659_060 Hb_000331_160 Hb_000331_160 Hb_000186_260--Hb_000331_160 Hb_000186_260--Hb_001473_080 Hb_001396_290 Hb_001396_290 Hb_000186_260--Hb_001396_290 Hb_004017_040 Hb_004017_040 Hb_000186_260--Hb_004017_040 Hb_000120_610 Hb_000120_610 Hb_002659_060--Hb_000120_610 Hb_000594_020 Hb_000594_020 Hb_002659_060--Hb_000594_020 Hb_002659_060--Hb_000504_160 Hb_002659_060--Hb_004920_130 Hb_033883_060 Hb_033883_060 Hb_002659_060--Hb_033883_060 Hb_004635_050 Hb_004635_050 Hb_002659_060--Hb_004635_050 Hb_004920_130--Hb_033883_060 Hb_001157_180 Hb_001157_180 Hb_004920_130--Hb_001157_180 Hb_031042_070 Hb_031042_070 Hb_004920_130--Hb_031042_070 Hb_000813_100 Hb_000813_100 Hb_004920_130--Hb_000813_100 Hb_000821_010 Hb_000821_010 Hb_004920_130--Hb_000821_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.1681 26.7649 3.35639 4.99439 50.6696 17.1043
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.6237 3.58445 2.06477 10.7097 4.42012

CAGE analysis