Hb_003626_080

Information

Type -
Description -
Location Contig3626: 77678-82727
Sequence    

Annotation

kegg
ID rcu:RCOM_1050200
description hypothetical protein
nr
ID XP_002514237.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RKJ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1050200 PE=4 SV=1
Gene Ontology
ID GO:0005773
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 030_F14.ab1: 77834-78447

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003626_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_052548_010 0.2251765824 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1 [Jatropha curcas]
3 Hb_003038_150 0.2409640713 - - -
4 Hb_000703_300 0.2570617027 - - -
5 Hb_006629_020 0.2593832744 - - ferric reductase oxidase [Manihot esculenta]
6 Hb_010174_210 0.2597964713 - - PREDICTED: small heat shock protein, chloroplastic-like isoform X1 [Jatropha curcas]
7 Hb_153395_010 0.2608123124 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
8 Hb_021254_010 0.2615524551 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
9 Hb_006351_060 0.261644795 - - PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis sativus]
10 Hb_010488_010 0.2676125357 - - PREDICTED: (+)-neomenthol dehydrogenase-like isoform X1 [Jatropha curcas]
11 Hb_011574_010 0.2755340283 - - -
12 Hb_000281_070 0.2874939866 - - rubisco subunit binding-protein beta subunit, rubb, putative [Ricinus communis]
13 Hb_006052_030 0.2893488103 - - PREDICTED: dnaJ protein ERDJ3A [Jatropha curcas]
14 Hb_002249_210 0.2900864269 - - -
15 Hb_002276_070 0.2919108343 - - PREDICTED: heat shock protein 83 [Jatropha curcas]
16 Hb_001766_040 0.2985374736 - - chaperone clpb, putative [Ricinus communis]
17 Hb_078106_010 0.3023767138 - - seed maturation protein PM37 [Populus trichocarpa]
18 Hb_001437_120 0.3064793236 - - PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Jatropha curcas]
19 Hb_001758_110 0.313422024 - - Ran GTPase binding protein, putative [Ricinus communis]
20 Hb_003327_020 0.3136990693 - - PREDICTED: phytosulfokine receptor 2-like, partial [Jatropha curcas]

Gene co-expression network

sample Hb_003626_080 Hb_003626_080 Hb_052548_010 Hb_052548_010 Hb_003626_080--Hb_052548_010 Hb_003038_150 Hb_003038_150 Hb_003626_080--Hb_003038_150 Hb_000703_300 Hb_000703_300 Hb_003626_080--Hb_000703_300 Hb_006629_020 Hb_006629_020 Hb_003626_080--Hb_006629_020 Hb_010174_210 Hb_010174_210 Hb_003626_080--Hb_010174_210 Hb_153395_010 Hb_153395_010 Hb_003626_080--Hb_153395_010 Hb_002960_040 Hb_002960_040 Hb_052548_010--Hb_002960_040 Hb_065525_070 Hb_065525_070 Hb_052548_010--Hb_065525_070 Hb_002783_070 Hb_002783_070 Hb_052548_010--Hb_002783_070 Hb_000976_130 Hb_000976_130 Hb_052548_010--Hb_000976_130 Hb_002030_050 Hb_002030_050 Hb_052548_010--Hb_002030_050 Hb_003327_020 Hb_003327_020 Hb_052548_010--Hb_003327_020 Hb_003038_150--Hb_000703_300 Hb_011574_010 Hb_011574_010 Hb_003038_150--Hb_011574_010 Hb_023675_030 Hb_023675_030 Hb_003038_150--Hb_023675_030 Hb_002249_210 Hb_002249_210 Hb_003038_150--Hb_002249_210 Hb_000236_450 Hb_000236_450 Hb_003038_150--Hb_000236_450 Hb_008123_010 Hb_008123_010 Hb_003038_150--Hb_008123_010 Hb_001766_040 Hb_001766_040 Hb_000703_300--Hb_001766_040 Hb_001488_260 Hb_001488_260 Hb_000703_300--Hb_001488_260 Hb_001366_160 Hb_001366_160 Hb_000703_300--Hb_001366_160 Hb_000078_170 Hb_000078_170 Hb_000703_300--Hb_000078_170 Hb_000330_080 Hb_000330_080 Hb_000703_300--Hb_000330_080 Hb_078106_010 Hb_078106_010 Hb_006629_020--Hb_078106_010 Hb_167973_010 Hb_167973_010 Hb_006629_020--Hb_167973_010 Hb_005799_020 Hb_005799_020 Hb_006629_020--Hb_005799_020 Hb_006573_010 Hb_006573_010 Hb_006629_020--Hb_006573_010 Hb_000922_220 Hb_000922_220 Hb_006629_020--Hb_000922_220 Hb_004875_010 Hb_004875_010 Hb_006629_020--Hb_004875_010 Hb_000941_140 Hb_000941_140 Hb_010174_210--Hb_000941_140 Hb_020156_060 Hb_020156_060 Hb_010174_210--Hb_020156_060 Hb_010020_010 Hb_010020_010 Hb_010174_210--Hb_010020_010 Hb_004296_010 Hb_004296_010 Hb_010174_210--Hb_004296_010 Hb_008147_050 Hb_008147_050 Hb_010174_210--Hb_008147_050 Hb_000062_110 Hb_000062_110 Hb_010174_210--Hb_000062_110 Hb_153395_010--Hb_052548_010 Hb_012098_050 Hb_012098_050 Hb_153395_010--Hb_012098_050 Hb_153395_010--Hb_003038_150 Hb_002863_080 Hb_002863_080 Hb_153395_010--Hb_002863_080 Hb_113673_010 Hb_113673_010 Hb_153395_010--Hb_113673_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.580991 6.54513 6.58482 6.46885 28.8334 2.96957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.178868 0 0.130292 3.72565 37.5997

CAGE analysis