Hb_003632_010

Information

Type -
Description -
Location Contig3632: 16082-19532
Sequence    

Annotation

kegg
ID rcu:RCOM_1073680
description hypothetical protein
nr
ID XP_002527167.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SME8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1073680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37349: 16053-19511
cDNA
(Sanger)
(ID:Location)		 003_A06.ab1: 16154-18498 , 007_G11.ab1: 16156-18457 , 041_J19.ab1: 16073-17230

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003632_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000046_110 0.0734505277 - - PREDICTED: 54S ribosomal protein L39, mitochondrial [Jatropha curcas]
3 Hb_006117_070 0.0776241605 - - PREDICTED: uncharacterized protein LOC105639569 isoform X2 [Jatropha curcas]
4 Hb_001109_020 0.0777187603 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002027_210 0.0779014449 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
6 Hb_003455_040 0.0785669532 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
7 Hb_000377_060 0.0790836702 - - ARF GTPase activator, putative [Ricinus communis]
8 Hb_000302_220 0.0803229926 - - PREDICTED: origin of replication complex subunit 5 isoform X1 [Jatropha curcas]
9 Hb_000086_070 0.0825573935 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
10 Hb_002918_200 0.0826450966 - - -
11 Hb_000431_010 0.0830613383 - - hypothetical protein POPTR_0016s05340g [Populus trichocarpa]
12 Hb_001140_060 0.0835854746 - - PREDICTED: ADP-ribosylation factor-related protein 1 [Prunus mume]
13 Hb_008289_060 0.0868218366 - - PREDICTED: general transcription factor IIE subunit 1-like isoform X1 [Jatropha curcas]
14 Hb_005432_030 0.0872026938 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
15 Hb_003376_030 0.0873098839 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
16 Hb_004899_320 0.0875242452 - - PREDICTED: oligouridylate-binding protein 1-like [Jatropha curcas]
17 Hb_000023_340 0.087568306 - - PREDICTED: enhancer of rudimentary homolog [Jatropha curcas]
18 Hb_003927_130 0.0886835757 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
19 Hb_001829_060 0.0895212797 - - Eukaryotic translation initiation factor 3 subunit, putative [Ricinus communis]
20 Hb_029866_040 0.0903142533 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]

Gene co-expression network

sample Hb_003632_010 Hb_003632_010 Hb_000046_110 Hb_000046_110 Hb_003632_010--Hb_000046_110 Hb_006117_070 Hb_006117_070 Hb_003632_010--Hb_006117_070 Hb_001109_020 Hb_001109_020 Hb_003632_010--Hb_001109_020 Hb_002027_210 Hb_002027_210 Hb_003632_010--Hb_002027_210 Hb_003455_040 Hb_003455_040 Hb_003632_010--Hb_003455_040 Hb_000377_060 Hb_000377_060 Hb_003632_010--Hb_000377_060 Hb_000046_110--Hb_001109_020 Hb_001829_060 Hb_001829_060 Hb_000046_110--Hb_001829_060 Hb_000751_130 Hb_000751_130 Hb_000046_110--Hb_000751_130 Hb_008311_010 Hb_008311_010 Hb_000046_110--Hb_008311_010 Hb_003927_130 Hb_003927_130 Hb_000046_110--Hb_003927_130 Hb_001140_060 Hb_001140_060 Hb_006117_070--Hb_001140_060 Hb_005289_030 Hb_005289_030 Hb_006117_070--Hb_005289_030 Hb_000230_510 Hb_000230_510 Hb_006117_070--Hb_000230_510 Hb_006541_030 Hb_006541_030 Hb_006117_070--Hb_006541_030 Hb_012753_160 Hb_012753_160 Hb_006117_070--Hb_012753_160 Hb_101705_030 Hb_101705_030 Hb_006117_070--Hb_101705_030 Hb_001109_020--Hb_001829_060 Hb_001109_020--Hb_003927_130 Hb_000205_270 Hb_000205_270 Hb_001109_020--Hb_000205_270 Hb_000883_050 Hb_000883_050 Hb_001109_020--Hb_000883_050 Hb_000086_070 Hb_000086_070 Hb_001109_020--Hb_000086_070 Hb_000173_220 Hb_000173_220 Hb_002027_210--Hb_000173_220 Hb_003376_030 Hb_003376_030 Hb_002027_210--Hb_003376_030 Hb_005432_030 Hb_005432_030 Hb_002027_210--Hb_005432_030 Hb_000146_020 Hb_000146_020 Hb_002027_210--Hb_000146_020 Hb_001191_090 Hb_001191_090 Hb_002027_210--Hb_001191_090 Hb_002027_210--Hb_003455_040 Hb_003455_040--Hb_003376_030 Hb_003994_040 Hb_003994_040 Hb_003455_040--Hb_003994_040 Hb_003455_040--Hb_000173_220 Hb_003455_040--Hb_012753_160 Hb_002097_060 Hb_002097_060 Hb_003455_040--Hb_002097_060 Hb_000377_060--Hb_001109_020 Hb_029866_040 Hb_029866_040 Hb_000377_060--Hb_029866_040 Hb_011381_100 Hb_011381_100 Hb_000377_060--Hb_011381_100 Hb_003018_190 Hb_003018_190 Hb_000377_060--Hb_003018_190 Hb_000377_060--Hb_008311_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
80.2875 21.0506 24.865 44.3554 50.1709 78.5635
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
121.09 147.818 144.125 25.8456 33.6184

CAGE analysis