Hb_003632_020

Information

Type -
Description -
Location Contig3632: 27496-28182
Sequence    

Annotation

kegg
ID pop:POPTR_0006s06480g
description POPTRDRAFT_560576; calcium-binding family protein
nr
ID XP_002308063.2
description calcium-binding family protein [Populus trichocarpa]
swissprot
ID O22845
description Calmodulin-like protein 5 OS=Arabidopsis thaliana GN=CML5 PE=2 SV=2
trembl
ID B9HA89
description Calcium-binding family protein OS=Populus trichocarpa GN=POPTR_0006s06480g PE=4 SV=2
Gene Ontology
ID GO:0016491
description calmodulin-like protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003632_020 0.0 - - calcium-binding family protein [Populus trichocarpa]
2 Hb_010326_020 0.0601530207 - - PREDICTED: thioredoxin-like 4, chloroplastic [Jatropha curcas]
3 Hb_011724_040 0.0621480061 - - PREDICTED: uncharacterized protein LOC105632860 [Jatropha curcas]
4 Hb_002121_050 0.0746312162 - - hypothetical protein EUGRSUZ_D02586 [Eucalyptus grandis]
5 Hb_002375_030 0.0753335198 - - F-box family protein [Populus trichocarpa]
6 Hb_001277_350 0.0753624154 - - early light-induced protein, putative [Ricinus communis]
7 Hb_008195_070 0.077947212 - - PREDICTED: thylakoid lumenal protein At1g12250, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000497_050 0.0781813719 - - PREDICTED: photosystem II repair protein PSB27-H1, chloroplastic [Jatropha curcas]
9 Hb_000049_100 0.0782250242 - - Photosystem II reaction center W protein, putative [Ricinus communis]
10 Hb_000230_420 0.0806907174 - - GS [Hevea brasiliensis subsp. brasiliensis]
11 Hb_000254_130 0.0808854331 - - Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]
12 Hb_002752_020 0.0835580909 - - FKBP-type peptidyl-prolyl cis-trans isomerase 3 family protein [Populus trichocarpa]
13 Hb_002534_020 0.0836339148 - - PREDICTED: chlorophyll a-b binding protein 4, chloroplastic [Gossypium raimondii]
14 Hb_001534_060 0.0858442567 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]
15 Hb_007044_270 0.0864280322 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
16 Hb_000069_760 0.087530234 - - PREDICTED: protein CURVATURE THYLAKOID 1A, chloroplastic [Jatropha curcas]
17 Hb_003020_120 0.0880689377 - - PREDICTED: protein TIC 62, chloroplastic [Populus euphratica]
18 Hb_001975_100 0.0898735026 - - chlorophyll a-b binding protein 151, chloroplastic [Jatropha curcas]
19 Hb_000369_110 0.0900767545 - - ankyrin repeat-containing protein, putative [Ricinus communis]
20 Hb_001292_030 0.0918406361 - - PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003632_020 Hb_003632_020 Hb_010326_020 Hb_010326_020 Hb_003632_020--Hb_010326_020 Hb_011724_040 Hb_011724_040 Hb_003632_020--Hb_011724_040 Hb_002121_050 Hb_002121_050 Hb_003632_020--Hb_002121_050 Hb_002375_030 Hb_002375_030 Hb_003632_020--Hb_002375_030 Hb_001277_350 Hb_001277_350 Hb_003632_020--Hb_001277_350 Hb_008195_070 Hb_008195_070 Hb_003632_020--Hb_008195_070 Hb_010326_020--Hb_011724_040 Hb_003020_120 Hb_003020_120 Hb_010326_020--Hb_003020_120 Hb_000230_420 Hb_000230_420 Hb_010326_020--Hb_000230_420 Hb_000369_110 Hb_000369_110 Hb_010326_020--Hb_000369_110 Hb_000049_100 Hb_000049_100 Hb_010326_020--Hb_000049_100 Hb_002534_020 Hb_002534_020 Hb_011724_040--Hb_002534_020 Hb_001534_060 Hb_001534_060 Hb_011724_040--Hb_001534_060 Hb_006132_080 Hb_006132_080 Hb_011724_040--Hb_006132_080 Hb_011724_040--Hb_002121_050 Hb_033187_010 Hb_033187_010 Hb_011724_040--Hb_033187_010 Hb_000497_050 Hb_000497_050 Hb_002121_050--Hb_000497_050 Hb_002121_050--Hb_006132_080 Hb_002752_020 Hb_002752_020 Hb_002121_050--Hb_002752_020 Hb_156093_010 Hb_156093_010 Hb_002121_050--Hb_156093_010 Hb_008225_050 Hb_008225_050 Hb_002121_050--Hb_008225_050 Hb_007537_040 Hb_007537_040 Hb_002121_050--Hb_007537_040 Hb_002375_030--Hb_008195_070 Hb_001006_040 Hb_001006_040 Hb_002375_030--Hb_001006_040 Hb_001292_030 Hb_001292_030 Hb_002375_030--Hb_001292_030 Hb_001975_100 Hb_001975_100 Hb_002375_030--Hb_001975_100 Hb_000254_130 Hb_000254_130 Hb_002375_030--Hb_000254_130 Hb_002375_030--Hb_000049_100 Hb_001277_350--Hb_002534_020 Hb_001277_350--Hb_000497_050 Hb_001277_350--Hb_002752_020 Hb_146255_030 Hb_146255_030 Hb_001277_350--Hb_146255_030 Hb_001958_060 Hb_001958_060 Hb_001277_350--Hb_001958_060 Hb_001277_350--Hb_001975_100 Hb_146225_020 Hb_146225_020 Hb_008195_070--Hb_146225_020 Hb_000719_030 Hb_000719_030 Hb_008195_070--Hb_000719_030 Hb_013726_060 Hb_013726_060 Hb_008195_070--Hb_013726_060 Hb_008195_070--Hb_002121_050 Hb_008195_070--Hb_000230_420
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.198563 0.480155 13.8154 6.95728 0 0.206978
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0830516 0.065288 0 0.186104 22.5437

CAGE analysis