Hb_003632_030

Information

Type -
Description -
Location Contig3632: 48110-51828
Sequence    

Annotation

kegg
ID rcu:RCOM_0104810
description heat shock protein, putative
nr
ID XP_012078471.1
description PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
swissprot
ID P36181
description Heat shock cognate protein 80 OS=Solanum lycopersicum GN=HSC80 PE=2 SV=1
trembl
ID A0A067KC64
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13163 PE=3 SV=1
Gene Ontology
ID GO:0005524
description heat shock cognate protein 80

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37351: 48188-51942
cDNA
(Sanger)
(ID:Location)		 005_H21.ab1: 49942-50726

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003632_030 0.0 - - PREDICTED: heat shock cognate protein 80 [Jatropha curcas]
2 Hb_022250_100 0.1014285683 - - calnexin, putative [Ricinus communis]
3 Hb_006846_080 0.1043814138 - - calnexin, putative [Ricinus communis]
4 Hb_119600_050 0.1045349595 - - sugar transporter, putative [Ricinus communis]
5 Hb_005250_010 0.1116471259 - - hypothetical protein JCGZ_15339 [Jatropha curcas]
6 Hb_001411_030 0.1133632651 - - hypothetical protein POPTR_0003s09620g [Populus trichocarpa]
7 Hb_000562_050 0.1145941734 - - PREDICTED: uncharacterized protein LOC105635369 [Jatropha curcas]
8 Hb_005914_040 0.1154283146 - - o-linked n-acetylglucosamine transferase, ogt, putative [Ricinus communis]
9 Hb_000172_350 0.117934754 - - PREDICTED: uncharacterized protein LOC105650963 [Jatropha curcas]
10 Hb_001789_020 0.1183329836 - - PREDICTED: tripeptidyl-peptidase 2 isoform X1 [Jatropha curcas]
11 Hb_006355_020 0.1211921117 - - PREDICTED: CLIP-associated protein [Jatropha curcas]
12 Hb_024570_040 0.1243490365 - - PREDICTED: clathrin interactor EPSIN 1 [Jatropha curcas]
13 Hb_011616_020 0.1270713935 - - hypothetical protein CICLE_v10004968mg [Citrus clementina]
14 Hb_003490_050 0.1272364719 - - PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic [Jatropha curcas]
15 Hb_002320_090 0.1290886802 - - PREDICTED: endoglucanase 25-like [Jatropha curcas]
16 Hb_000575_100 0.1296572583 - - PREDICTED: nephrocystin-3 isoform X2 [Jatropha curcas]
17 Hb_000479_170 0.1307476015 - - chaperone clpb, putative [Ricinus communis]
18 Hb_002636_040 0.1309887187 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
19 Hb_010344_030 0.1314225673 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001396_240 0.1319485734 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003632_030 Hb_003632_030 Hb_022250_100 Hb_022250_100 Hb_003632_030--Hb_022250_100 Hb_006846_080 Hb_006846_080 Hb_003632_030--Hb_006846_080 Hb_119600_050 Hb_119600_050 Hb_003632_030--Hb_119600_050 Hb_005250_010 Hb_005250_010 Hb_003632_030--Hb_005250_010 Hb_001411_030 Hb_001411_030 Hb_003632_030--Hb_001411_030 Hb_000562_050 Hb_000562_050 Hb_003632_030--Hb_000562_050 Hb_006355_020 Hb_006355_020 Hb_022250_100--Hb_006355_020 Hb_000041_300 Hb_000041_300 Hb_022250_100--Hb_000041_300 Hb_000684_350 Hb_000684_350 Hb_022250_100--Hb_000684_350 Hb_000958_070 Hb_000958_070 Hb_022250_100--Hb_000958_070 Hb_022250_100--Hb_005250_010 Hb_022250_100--Hb_000562_050 Hb_005914_040 Hb_005914_040 Hb_006846_080--Hb_005914_040 Hb_000025_500 Hb_000025_500 Hb_006846_080--Hb_000025_500 Hb_002399_020 Hb_002399_020 Hb_006846_080--Hb_002399_020 Hb_010757_030 Hb_010757_030 Hb_006846_080--Hb_010757_030 Hb_004225_040 Hb_004225_040 Hb_006846_080--Hb_004225_040 Hb_119600_050--Hb_001411_030 Hb_007123_050 Hb_007123_050 Hb_119600_050--Hb_007123_050 Hb_000284_230 Hb_000284_230 Hb_119600_050--Hb_000284_230 Hb_000608_300 Hb_000608_300 Hb_119600_050--Hb_000608_300 Hb_119600_050--Hb_006355_020 Hb_013405_080 Hb_013405_080 Hb_005250_010--Hb_013405_080 Hb_025477_050 Hb_025477_050 Hb_005250_010--Hb_025477_050 Hb_005250_010--Hb_005914_040 Hb_004218_190 Hb_004218_190 Hb_005250_010--Hb_004218_190 Hb_026053_040 Hb_026053_040 Hb_005250_010--Hb_026053_040 Hb_000033_110 Hb_000033_110 Hb_005250_010--Hb_000033_110 Hb_001411_030--Hb_004225_040 Hb_001411_030--Hb_022250_100 Hb_005211_020 Hb_005211_020 Hb_001411_030--Hb_005211_020 Hb_003470_070 Hb_003470_070 Hb_001411_030--Hb_003470_070 Hb_001579_200 Hb_001579_200 Hb_001411_030--Hb_001579_200 Hb_156850_090 Hb_156850_090 Hb_000562_050--Hb_156850_090 Hb_022250_010 Hb_022250_010 Hb_000562_050--Hb_022250_010 Hb_001789_020 Hb_001789_020 Hb_000562_050--Hb_001789_020 Hb_001059_130 Hb_001059_130 Hb_000562_050--Hb_001059_130 Hb_033642_060 Hb_033642_060 Hb_000562_050--Hb_033642_060 Hb_000562_050--Hb_006355_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
190.155 248.763 291.35 467.133 328.937 383.423
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
80.083 77.6897 124.411 420.558 913.229

CAGE analysis