Hb_003633_030

Information

Type -
Description -
Location Contig3633: 46641-49652
Sequence    

Annotation

kegg
ID rcu:RCOM_1433330
description f-actin capping protein alpha, putative
nr
ID XP_002512432.1
description f-actin capping protein alpha, putative [Ricinus communis]
swissprot
ID O82631
description F-actin-capping protein subunit alpha OS=Arabidopsis thaliana GN=At3g05520 PE=2 SV=2
trembl
ID B9RFB3
description F-actin capping protein alpha, putative OS=Ricinus communis GN=RCOM_1433330 PE=4 SV=1
Gene Ontology
ID GO:0016043
description f-actin-capping protein subunit alpha

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37352: 46776-50056
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_030 0.0 - - f-actin capping protein alpha, putative [Ricinus communis]
2 Hb_033594_120 0.060724239 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
3 Hb_000599_300 0.0674828513 - - PREDICTED: TBC1 domain family member 15-like [Jatropha curcas]
4 Hb_007017_030 0.0680506844 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
5 Hb_002893_080 0.0715177057 - - PREDICTED: V-type proton ATPase subunit c''1 [Jatropha curcas]
6 Hb_000421_220 0.0734135293 - - PREDICTED: tRNA-splicing endonuclease subunit Sen2-1-like isoform X2 [Jatropha curcas]
7 Hb_001279_150 0.0735636162 - - PREDICTED: ATP synthase mitochondrial F1 complex assembly factor 2 [Jatropha curcas]
8 Hb_002473_130 0.0748168383 - - PREDICTED: THO complex subunit 3 isoform X1 [Jatropha curcas]
9 Hb_008406_190 0.0779343097 - - PREDICTED: RNA polymerase II subunit 5-mediating protein homolog isoform X2 [Jatropha curcas]
10 Hb_000054_090 0.0780724406 - - zinc finger protein, putative [Ricinus communis]
11 Hb_015934_070 0.0791216619 - - PREDICTED: ribose-phosphate pyrophosphokinase 4 isoform X1 [Jatropha curcas]
12 Hb_001579_270 0.080420872 - - PREDICTED: phosphatidylinositol 3-kinase, root isoform isoform X1 [Jatropha curcas]
13 Hb_001252_130 0.081561785 - - PREDICTED: protein YIPF1 homolog [Jatropha curcas]
14 Hb_002271_020 0.0830626765 - - hypothetical protein EUGRSUZ_G02641 [Eucalyptus grandis]
15 Hb_012799_160 0.0835349257 - - PREDICTED: ADP-ribosylation factor-related protein 1-like [Jatropha curcas]
16 Hb_000056_260 0.085207998 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
17 Hb_003226_140 0.0868903346 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
18 Hb_001789_070 0.0869180203 - - PREDICTED: probable prolyl 4-hydroxylase 12 [Jatropha curcas]
19 Hb_143398_010 0.0878850712 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
20 Hb_002518_210 0.089158669 - - PREDICTED: mitochondrial uncoupling protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_003633_030 Hb_003633_030 Hb_033594_120 Hb_033594_120 Hb_003633_030--Hb_033594_120 Hb_000599_300 Hb_000599_300 Hb_003633_030--Hb_000599_300 Hb_007017_030 Hb_007017_030 Hb_003633_030--Hb_007017_030 Hb_002893_080 Hb_002893_080 Hb_003633_030--Hb_002893_080 Hb_000421_220 Hb_000421_220 Hb_003633_030--Hb_000421_220 Hb_001279_150 Hb_001279_150 Hb_003633_030--Hb_001279_150 Hb_001252_130 Hb_001252_130 Hb_033594_120--Hb_001252_130 Hb_033594_120--Hb_000421_220 Hb_000054_090 Hb_000054_090 Hb_033594_120--Hb_000054_090 Hb_000960_060 Hb_000960_060 Hb_033594_120--Hb_000960_060 Hb_002473_130 Hb_002473_130 Hb_033594_120--Hb_002473_130 Hb_000599_300--Hb_002893_080 Hb_007672_060 Hb_007672_060 Hb_000599_300--Hb_007672_060 Hb_001579_270 Hb_001579_270 Hb_000599_300--Hb_001579_270 Hb_000599_300--Hb_002473_130 Hb_000599_300--Hb_000054_090 Hb_007017_030--Hb_002893_080 Hb_007017_030--Hb_001279_150 Hb_008406_190 Hb_008406_190 Hb_007017_030--Hb_008406_190 Hb_001828_190 Hb_001828_190 Hb_007017_030--Hb_001828_190 Hb_015934_070 Hb_015934_070 Hb_007017_030--Hb_015934_070 Hb_002893_080--Hb_008406_190 Hb_000116_440 Hb_000116_440 Hb_002893_080--Hb_000116_440 Hb_001579_220 Hb_001579_220 Hb_002893_080--Hb_001579_220 Hb_002183_060 Hb_002183_060 Hb_000421_220--Hb_002183_060 Hb_008453_030 Hb_008453_030 Hb_000421_220--Hb_008453_030 Hb_004934_100 Hb_004934_100 Hb_000421_220--Hb_004934_100 Hb_025240_040 Hb_025240_040 Hb_000421_220--Hb_025240_040 Hb_001234_100 Hb_001234_100 Hb_000421_220--Hb_001234_100 Hb_000421_220--Hb_015934_070 Hb_003750_050 Hb_003750_050 Hb_001279_150--Hb_003750_050 Hb_000215_110 Hb_000215_110 Hb_001279_150--Hb_000215_110 Hb_005489_060 Hb_005489_060 Hb_001279_150--Hb_005489_060 Hb_000120_670 Hb_000120_670 Hb_001279_150--Hb_000120_670 Hb_002182_080 Hb_002182_080 Hb_001279_150--Hb_002182_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.47195 0.522361 1.02622 2.10336 1.48898 2.58925
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.3348 2.59086 1.52342 1.64291 1.49127

CAGE analysis