Hb_003633_040

Information

Type -
Description -
Location Contig3633: 51631-54548
Sequence    

Annotation

kegg
ID csv:101203991
description probable U6 snRNA-associated Sm-like protein LSm4-like
nr
ID KJB49936.1
description hypothetical protein B456_008G146200 [Gossypium raimondii]
swissprot
ID Q9ZRU9
description Probable U6 snRNA-associated Sm-like protein LSm4 OS=Fagus sylvatica GN=LSM4 PE=2 SV=1
trembl
ID A0A0D2T0L6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G146200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_040 0.0 - - hypothetical protein B456_008G146200 [Gossypium raimondii]
2 Hb_115107_010 0.1312332433 - - Early-responsive to dehydration stress protein (ERD4) isoform 1 [Theobroma cacao]
3 Hb_076875_020 0.1338052076 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
4 Hb_002110_040 0.1377092998 - - hypothetical protein AMTR_s00135p00074190 [Amborella trichopoda]
5 Hb_115477_010 0.1432608101 - - Protein dom-3, putative [Ricinus communis]
6 Hb_019053_010 0.1469036622 - - -
7 Hb_000850_040 0.1469687678 - - conserved hypothetical protein [Ricinus communis]
8 Hb_007026_040 0.1505979089 - - PREDICTED: chaperonin 60 subunit alpha 2, chloroplastic-like [Eucalyptus grandis]
9 Hb_148079_010 0.1507535322 - - PREDICTED: WD repeat-containing protein 82 [Jatropha curcas]
10 Hb_054586_020 0.1519587769 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]
11 Hb_010565_010 0.1554937505 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
12 Hb_069738_010 0.156252594 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
13 Hb_007333_040 0.1625361597 - - PREDICTED: proline-rich receptor-like protein kinase PERK1-like [Glycine max]
14 Hb_012506_010 0.1631654337 - - PREDICTED: UDP-D-apiose/UDP-D-xylose synthase 2 [Jatropha curcas]
15 Hb_168973_010 0.1638378146 - - -
16 Hb_000162_100 0.1649599122 - - PREDICTED: uncharacterized protein LOC105638832 [Jatropha curcas]
17 Hb_103760_010 0.1655330783 - - serine/arginine rich splicing factor, putative [Ricinus communis]
18 Hb_001135_140 0.1667273536 - - PREDICTED: serine/threonine-protein kinase PBS1-like [Malus domestica]
19 Hb_081517_010 0.1703031482 - - PREDICTED: putative potassium transporter 12 isoform X2 [Jatropha curcas]
20 Hb_001386_140 0.1704648852 - - PREDICTED: B2 protein [Jatropha curcas]

Gene co-expression network

sample Hb_003633_040 Hb_003633_040 Hb_115107_010 Hb_115107_010 Hb_003633_040--Hb_115107_010 Hb_076875_020 Hb_076875_020 Hb_003633_040--Hb_076875_020 Hb_002110_040 Hb_002110_040 Hb_003633_040--Hb_002110_040 Hb_115477_010 Hb_115477_010 Hb_003633_040--Hb_115477_010 Hb_019053_010 Hb_019053_010 Hb_003633_040--Hb_019053_010 Hb_000850_040 Hb_000850_040 Hb_003633_040--Hb_000850_040 Hb_115107_010--Hb_002110_040 Hb_009529_040 Hb_009529_040 Hb_115107_010--Hb_009529_040 Hb_115107_010--Hb_115477_010 Hb_007026_040 Hb_007026_040 Hb_115107_010--Hb_007026_040 Hb_001135_140 Hb_001135_140 Hb_115107_010--Hb_001135_140 Hb_168973_010 Hb_168973_010 Hb_115107_010--Hb_168973_010 Hb_010565_010 Hb_010565_010 Hb_076875_020--Hb_010565_010 Hb_152554_010 Hb_152554_010 Hb_076875_020--Hb_152554_010 Hb_000812_040 Hb_000812_040 Hb_076875_020--Hb_000812_040 Hb_076875_020--Hb_001135_140 Hb_038237_010 Hb_038237_010 Hb_076875_020--Hb_038237_010 Hb_007188_020 Hb_007188_020 Hb_076875_020--Hb_007188_020 Hb_002110_040--Hb_001135_140 Hb_000359_140 Hb_000359_140 Hb_002110_040--Hb_000359_140 Hb_000109_170 Hb_000109_170 Hb_002110_040--Hb_000109_170 Hb_002110_040--Hb_009529_040 Hb_115477_010--Hb_168973_010 Hb_006663_090 Hb_006663_090 Hb_115477_010--Hb_006663_090 Hb_115477_010--Hb_007026_040 Hb_001386_140 Hb_001386_140 Hb_115477_010--Hb_001386_140 Hb_115477_010--Hb_010565_010 Hb_068014_010 Hb_068014_010 Hb_019053_010--Hb_068014_010 Hb_106415_010 Hb_106415_010 Hb_019053_010--Hb_106415_010 Hb_009119_020 Hb_009119_020 Hb_019053_010--Hb_009119_020 Hb_000074_060 Hb_000074_060 Hb_019053_010--Hb_000074_060 Hb_019053_010--Hb_115477_010 Hb_183557_010 Hb_183557_010 Hb_000850_040--Hb_183557_010 Hb_075764_010 Hb_075764_010 Hb_000850_040--Hb_075764_010 Hb_026228_020 Hb_026228_020 Hb_000850_040--Hb_026228_020 Hb_004718_040 Hb_004718_040 Hb_000850_040--Hb_004718_040 Hb_106411_010 Hb_106411_010 Hb_000850_040--Hb_106411_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.98781 4.73125 2.45596 10.7905 5.03812 19.5985
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28295 5.06002 6.06285 7.38764 2.52405

CAGE analysis