Hb_003633_050

Information

Type -
Description -
Location Contig3633: 57820-62156
Sequence    

Annotation

kegg
ID tcc:TCM_026659
description Regulatory particle triple-A ATPase 5A
nr
ID KJB81027.1
description hypothetical protein B456_013G125900 [Gossypium raimondii]
swissprot
ID Q9SEI2
description 26S protease regulatory subunit 6A homolog A OS=Arabidopsis thaliana GN=RPT5A PE=1 SV=1
trembl
ID A0A0D2SD35
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G125900 PE=4 SV=1
Gene Ontology
ID GO:0000502
description 26s protease regulatory subunit 6a homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37353: 57820-62103
cDNA
(Sanger)
(ID:Location)		 026_H11.ab1: 57820-59800 , 047_M09.ab1: 57820-59837

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_050 0.0 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
2 Hb_000096_160 0.046225481 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
3 Hb_001085_240 0.0492348557 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
4 Hb_005914_170 0.0709705148 - - PREDICTED: eukaryotic translation initiation factor isoform 4E-2-like [Gossypium raimondii]
5 Hb_011344_190 0.0721275606 - - PREDICTED: maspardin [Jatropha curcas]
6 Hb_003376_250 0.0851785754 - - Transducin/WD40 repeat-like superfamily protein [Theobroma cacao]
7 Hb_019654_030 0.0854251368 - - maoC-like dehydratase domain-containing family protein [Populus trichocarpa]
8 Hb_000094_210 0.0866054163 - - glucose-6-phosphate isomerase, putative [Ricinus communis]
9 Hb_002284_230 0.0873256443 - - PREDICTED: uncharacterized protein At5g43822 [Jatropha curcas]
10 Hb_000025_190 0.0879255697 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
11 Hb_010560_050 0.0921792298 - - PREDICTED: acyl-protein thioesterase 1-like [Jatropha curcas]
12 Hb_000228_110 0.0926310192 - - unnamed protein product [Vitis vinifera]
13 Hb_000095_080 0.0927399865 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 7 [Jatropha curcas]
14 Hb_001218_030 0.092926682 - - PREDICTED: uncharacterized protein LOC105630612 [Jatropha curcas]
15 Hb_011344_120 0.0932019225 - - PREDICTED: uncharacterized protein LOC105645969 [Jatropha curcas]
16 Hb_002631_010 0.0934539061 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
17 Hb_009787_030 0.0939402862 - - Prolactin regulatory element-binding protein, putative [Ricinus communis]
18 Hb_000210_120 0.094167509 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
19 Hb_007416_090 0.0948237299 - - UDP-sugar transporter, putative [Ricinus communis]
20 Hb_003697_050 0.0961856231 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]

Gene co-expression network

sample Hb_003633_050 Hb_003633_050 Hb_000096_160 Hb_000096_160 Hb_003633_050--Hb_000096_160 Hb_001085_240 Hb_001085_240 Hb_003633_050--Hb_001085_240 Hb_005914_170 Hb_005914_170 Hb_003633_050--Hb_005914_170 Hb_011344_190 Hb_011344_190 Hb_003633_050--Hb_011344_190 Hb_003376_250 Hb_003376_250 Hb_003633_050--Hb_003376_250 Hb_019654_030 Hb_019654_030 Hb_003633_050--Hb_019654_030 Hb_000096_160--Hb_001085_240 Hb_000096_160--Hb_005914_170 Hb_000228_110 Hb_000228_110 Hb_000096_160--Hb_000228_110 Hb_001157_110 Hb_001157_110 Hb_000096_160--Hb_001157_110 Hb_000103_270 Hb_000103_270 Hb_000096_160--Hb_000103_270 Hb_000094_210 Hb_000094_210 Hb_001085_240--Hb_000094_210 Hb_001085_240--Hb_000228_110 Hb_002675_140 Hb_002675_140 Hb_001085_240--Hb_002675_140 Hb_001085_240--Hb_005914_170 Hb_000210_120 Hb_000210_120 Hb_005914_170--Hb_000210_120 Hb_011344_120 Hb_011344_120 Hb_005914_170--Hb_011344_120 Hb_001314_050 Hb_001314_050 Hb_005914_170--Hb_001314_050 Hb_031862_100 Hb_031862_100 Hb_005914_170--Hb_031862_100 Hb_023001_040 Hb_023001_040 Hb_005914_170--Hb_023001_040 Hb_000982_080 Hb_000982_080 Hb_011344_190--Hb_000982_080 Hb_011344_190--Hb_003376_250 Hb_008232_010 Hb_008232_010 Hb_011344_190--Hb_008232_010 Hb_005488_200 Hb_005488_200 Hb_011344_190--Hb_005488_200 Hb_001222_080 Hb_001222_080 Hb_011344_190--Hb_001222_080 Hb_003376_250--Hb_000982_080 Hb_003376_250--Hb_005488_200 Hb_001195_200 Hb_001195_200 Hb_003376_250--Hb_001195_200 Hb_000327_180 Hb_000327_180 Hb_003376_250--Hb_000327_180 Hb_007416_060 Hb_007416_060 Hb_003376_250--Hb_007416_060 Hb_009193_030 Hb_009193_030 Hb_019654_030--Hb_009193_030 Hb_000363_360 Hb_000363_360 Hb_019654_030--Hb_000363_360 Hb_005306_180 Hb_005306_180 Hb_019654_030--Hb_005306_180 Hb_002284_230 Hb_002284_230 Hb_019654_030--Hb_002284_230 Hb_000291_080 Hb_000291_080 Hb_019654_030--Hb_000291_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.025 13.449 14.3457 41.151 16.1394 20.3016
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.3285 34.2414 32.6242 45.9555 22.7541

CAGE analysis