Hb_003633_060

Information

Type -
Description -
Location Contig3633: 62864-63765
Sequence    

Annotation

kegg
ID rcu:RCOM_1433410
description Translationally-controlled tumor protein, putative
nr
ID AEQ20639.1
description translationally controlled tumor protein [Hevea brasiliensis]
swissprot
ID Q5J907
description Translationally-controlled tumor protein homolog OS=Elaeis guineensis var. tenera GN=TCTP PE=2 SV=1
trembl
ID R4HIT3
description Translationally controlled tumor protein OS=Hevea brasiliensis GN=TCTP PE=2 SV=1
Gene Ontology
ID GO:0005737
description translationally-controlled tumor protein homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37354: 62867-64844 , PASA_asmbl_37356: 62957-63397 , PASA_asmbl_37357: 63726-64670
cDNA
(Sanger)
(ID:Location)		 027_A18.ab1: 63014-64694

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_060 0.0 - - translationally controlled tumor protein [Hevea brasiliensis]
2 Hb_001373_060 0.07785358 - - PREDICTED: structure-specific endonuclease subunit slx1 [Jatropha curcas]
3 Hb_179296_010 0.0868551712 - - hypothetical protein B456_006G094200 [Gossypium raimondii]
4 Hb_000320_330 0.0882513223 - - uncharacterized protein LOC100527884 [Glycine max]
5 Hb_004057_010 0.0909515453 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
6 Hb_000567_410 0.0984270388 - - hypothetical protein JCGZ_12784 [Jatropha curcas]
7 Hb_001512_080 0.1020923614 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
8 Hb_005269_080 0.102587033 - - protein with unknown function [Ricinus communis]
9 Hb_001726_040 0.1042589043 - - hypothetical protein CICLE_v10029230mg [Citrus clementina]
10 Hb_003494_050 0.1047961431 - - hypothetical protein PRUPE_ppa013459mg [Prunus persica]
11 Hb_000676_160 0.1052487282 - - folate carrier protein, putative [Ricinus communis]
12 Hb_174865_010 0.1064218046 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
13 Hb_000066_100 0.1083055301 - - PREDICTED: uncharacterized protein LOC105648357 [Jatropha curcas]
14 Hb_000265_050 0.1085813546 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
15 Hb_005235_030 0.1123919224 - - PREDICTED: dolichol phosphate-mannose biosynthesis regulatory protein [Eucalyptus grandis]
16 Hb_072922_020 0.1124577846 - - SNARE-like superfamily protein [Theobroma cacao]
17 Hb_002798_020 0.112616539 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
18 Hb_011236_010 0.1127089924 - - hypothetical protein JCGZ_17006 [Jatropha curcas]
19 Hb_004459_040 0.1130048571 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
20 Hb_000453_120 0.1142213445 - - PREDICTED: proteasome subunit alpha type-3 [Jatropha curcas]

Gene co-expression network

sample Hb_003633_060 Hb_003633_060 Hb_001373_060 Hb_001373_060 Hb_003633_060--Hb_001373_060 Hb_179296_010 Hb_179296_010 Hb_003633_060--Hb_179296_010 Hb_000320_330 Hb_000320_330 Hb_003633_060--Hb_000320_330 Hb_004057_010 Hb_004057_010 Hb_003633_060--Hb_004057_010 Hb_000567_410 Hb_000567_410 Hb_003633_060--Hb_000567_410 Hb_001512_080 Hb_001512_080 Hb_003633_060--Hb_001512_080 Hb_003494_050 Hb_003494_050 Hb_001373_060--Hb_003494_050 Hb_001373_060--Hb_004057_010 Hb_000005_300 Hb_000005_300 Hb_001373_060--Hb_000005_300 Hb_006198_070 Hb_006198_070 Hb_001373_060--Hb_006198_070 Hb_001431_080 Hb_001431_080 Hb_001373_060--Hb_001431_080 Hb_174865_010 Hb_174865_010 Hb_179296_010--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_179296_010--Hb_000735_040 Hb_006915_040 Hb_006915_040 Hb_179296_010--Hb_006915_040 Hb_000134_070 Hb_000134_070 Hb_179296_010--Hb_000134_070 Hb_000676_160 Hb_000676_160 Hb_179296_010--Hb_000676_160 Hb_179296_010--Hb_001512_080 Hb_000436_030 Hb_000436_030 Hb_000320_330--Hb_000436_030 Hb_000384_120 Hb_000384_120 Hb_000320_330--Hb_000384_120 Hb_000479_160 Hb_000479_160 Hb_000320_330--Hb_000479_160 Hb_001172_100 Hb_001172_100 Hb_000320_330--Hb_001172_100 Hb_011485_020 Hb_011485_020 Hb_000320_330--Hb_011485_020 Hb_026053_020 Hb_026053_020 Hb_004057_010--Hb_026053_020 Hb_000676_390 Hb_000676_390 Hb_004057_010--Hb_000676_390 Hb_018133_020 Hb_018133_020 Hb_004057_010--Hb_018133_020 Hb_001726_040 Hb_001726_040 Hb_004057_010--Hb_001726_040 Hb_004057_010--Hb_006198_070 Hb_001329_150 Hb_001329_150 Hb_004057_010--Hb_001329_150 Hb_006478_160 Hb_006478_160 Hb_000567_410--Hb_006478_160 Hb_001085_270 Hb_001085_270 Hb_000567_410--Hb_001085_270 Hb_000093_110 Hb_000093_110 Hb_000567_410--Hb_000093_110 Hb_001085_120 Hb_001085_120 Hb_000567_410--Hb_001085_120 Hb_002811_080 Hb_002811_080 Hb_000567_410--Hb_002811_080 Hb_005063_050 Hb_005063_050 Hb_000567_410--Hb_005063_050 Hb_002110_200 Hb_002110_200 Hb_001512_080--Hb_002110_200 Hb_000224_140 Hb_000224_140 Hb_001512_080--Hb_000224_140 Hb_000254_050 Hb_000254_050 Hb_001512_080--Hb_000254_050 Hb_001512_080--Hb_001085_120 Hb_027654_050 Hb_027654_050 Hb_001512_080--Hb_027654_050 Hb_000453_120 Hb_000453_120 Hb_001512_080--Hb_000453_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
39.3067 19.1442 60.6242 72.5215 23.0335 63.3068
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
91.1368 271.353 103.291 43.5428 71.0172

CAGE analysis