Hb_003633_140

Information

Type -
Description -
Location Contig3633: 120795-131449
Sequence    

Annotation

kegg
ID rcu:RCOM_1433740
description hypothetical protein
nr
ID XP_012088983.1
description PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JV92
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23297 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37371: 120795-123112 , PASA_asmbl_37372: 121677-122470 , PASA_asmbl_37373: 120807-121186 , PASA_asmbl_37375: 127767-131408
cDNA
(Sanger)
(ID:Location)		 002_O03.ab1: 120795-122925 , 011_B21.ab1: 120795-122927 , 053_B21.ab1: 120795-122879

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_140 0.0 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
2 Hb_028795_010 0.1204444224 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
3 Hb_002609_090 0.1255523563 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
4 Hb_002316_050 0.1283965357 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001999_250 0.1412874534 - - PREDICTED: uncharacterized protein LOC105133073 isoform X1 [Populus euphratica]
6 Hb_007257_050 0.1512603511 - - protein with unknown function [Ricinus communis]
7 Hb_031089_030 0.1528962103 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
8 Hb_003349_010 0.1571442481 desease resistance Gene Name: NB-ARC hypothetical protein CICLE_v10023911mg [Citrus clementina]
9 Hb_003849_260 0.1609035288 - - PREDICTED: uncharacterized protein LOC105644666 [Jatropha curcas]
10 Hb_018133_030 0.1617863584 - - Heme-binding protein, putative [Ricinus communis]
11 Hb_010261_010 0.1625996877 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
12 Hb_000808_070 0.1633009404 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
13 Hb_000032_310 0.1635430789 - - ring finger protein, putative [Ricinus communis]
14 Hb_000265_250 0.1636508214 - - auxilin, putative [Ricinus communis]
15 Hb_001396_260 0.1702370581 - - PREDICTED: F-box only protein 6 [Jatropha curcas]
16 Hb_001504_190 0.1707970019 - - double-stranded RNA binding protein, putative [Ricinus communis]
17 Hb_009028_030 0.1730517053 desease resistance Gene Name: NB-ARC NBS type disease resistance protein, putative [Theobroma cacao]
18 Hb_001584_220 0.1739201914 - - galactinol synthase [Manihot esculenta]
19 Hb_003096_040 0.1750102584 transcription factor TF Family: HB hypothetical protein POPTR_0005s07290g [Populus trichocarpa]
20 Hb_003157_010 0.175266188 - - PREDICTED: exocyst complex component EXO70A1 [Jatropha curcas]

Gene co-expression network

sample Hb_003633_140 Hb_003633_140 Hb_028795_010 Hb_028795_010 Hb_003633_140--Hb_028795_010 Hb_002609_090 Hb_002609_090 Hb_003633_140--Hb_002609_090 Hb_002316_050 Hb_002316_050 Hb_003633_140--Hb_002316_050 Hb_001999_250 Hb_001999_250 Hb_003633_140--Hb_001999_250 Hb_007257_050 Hb_007257_050 Hb_003633_140--Hb_007257_050 Hb_031089_030 Hb_031089_030 Hb_003633_140--Hb_031089_030 Hb_009372_010 Hb_009372_010 Hb_028795_010--Hb_009372_010 Hb_028795_010--Hb_002316_050 Hb_018133_030 Hb_018133_030 Hb_028795_010--Hb_018133_030 Hb_000808_070 Hb_000808_070 Hb_028795_010--Hb_000808_070 Hb_004449_050 Hb_004449_050 Hb_028795_010--Hb_004449_050 Hb_164010_070 Hb_164010_070 Hb_002609_090--Hb_164010_070 Hb_000340_110 Hb_000340_110 Hb_002609_090--Hb_000340_110 Hb_000032_310 Hb_000032_310 Hb_002609_090--Hb_000032_310 Hb_144824_010 Hb_144824_010 Hb_002609_090--Hb_144824_010 Hb_006683_040 Hb_006683_040 Hb_002609_090--Hb_006683_040 Hb_001638_040 Hb_001638_040 Hb_002316_050--Hb_001638_040 Hb_000265_250 Hb_000265_250 Hb_002316_050--Hb_000265_250 Hb_002316_050--Hb_000808_070 Hb_002316_050--Hb_018133_030 Hb_000540_120 Hb_000540_120 Hb_002316_050--Hb_000540_120 Hb_001247_230 Hb_001247_230 Hb_001999_250--Hb_001247_230 Hb_003349_010 Hb_003349_010 Hb_001999_250--Hb_003349_010 Hb_001999_250--Hb_000265_250 Hb_001504_190 Hb_001504_190 Hb_001999_250--Hb_001504_190 Hb_075449_020 Hb_075449_020 Hb_001999_250--Hb_075449_020 Hb_002849_080 Hb_002849_080 Hb_001999_250--Hb_002849_080 Hb_007257_050--Hb_031089_030 Hb_010584_010 Hb_010584_010 Hb_007257_050--Hb_010584_010 Hb_009028_030 Hb_009028_030 Hb_007257_050--Hb_009028_030 Hb_007257_050--Hb_000265_250 Hb_007257_050--Hb_003349_010 Hb_003157_010 Hb_003157_010 Hb_007257_050--Hb_003157_010 Hb_003299_080 Hb_003299_080 Hb_031089_030--Hb_003299_080 Hb_084429_010 Hb_084429_010 Hb_031089_030--Hb_084429_010 Hb_001396_260 Hb_001396_260 Hb_031089_030--Hb_001396_260 Hb_000375_370 Hb_000375_370 Hb_031089_030--Hb_000375_370 Hb_001247_140 Hb_001247_140 Hb_031089_030--Hb_001247_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.1821 217.347 16.8553 14.9644 107.102 97.3171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.2133 13.5072 8.77856 53.2694 7.68639

CAGE analysis