Hb_003633_150

Information

Type -
Description -
Location Contig3633: 132059-135082
Sequence    

Annotation

kegg
ID rcu:RCOM_1433750
description serine/threonine protein phosphatase, putative (EC:3.1.3.16)
nr
ID KDP23463.1
description hypothetical protein JCGZ_23296 [Jatropha curcas]
swissprot
ID Q9M9W3
description Serine/threonine-protein phosphatase PP1 isozyme 9 OS=Arabidopsis thaliana GN=TOPP9 PE=2 SV=1
trembl
ID A0A067JKW0
description Serine/threonine-protein phosphatase OS=Jatropha curcas GN=JCGZ_23296 PE=3 SV=1
Gene Ontology
ID GO:0005737
description serine threonine-protein phosphatase pp1 isozyme 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37377: 131915-135131 , PASA_asmbl_37378: 132084-135112 , PASA_asmbl_37379: 132084-135112
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_150 0.0 - - hypothetical protein JCGZ_23296 [Jatropha curcas]
2 Hb_009476_110 0.0790304613 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
3 Hb_001247_160 0.0882401657 - - s-adenosylmethionine synthetase, putative [Ricinus communis]
4 Hb_005282_010 0.1034141731 - - PREDICTED: probable xyloglucan glycosyltransferase 12 [Populus euphratica]
5 Hb_182970_010 0.1086614064 - - calmodulin-binding protein 60-D [Populus trichocarpa]
6 Hb_000567_110 0.1112691774 - - hypothetical protein JCGZ_21556 [Jatropha curcas]
7 Hb_001405_060 0.1191448384 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 4-like [Jatropha curcas]
8 Hb_001226_170 0.1232994224 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
9 Hb_001189_150 0.1255432773 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 89-like [Jatropha curcas]
10 Hb_012272_010 0.1277711553 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_001329_080 0.1290272662 - - PREDICTED: probable protein phosphatase 2C 49 [Jatropha curcas]
12 Hb_002936_030 0.1298129993 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]
13 Hb_000210_160 0.1323069479 - - PREDICTED: protein YLS9-like [Jatropha curcas]
14 Hb_000892_030 0.1334632198 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
15 Hb_002849_110 0.1343623606 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
16 Hb_094437_050 0.1390950761 - - PREDICTED: uncharacterized protein LOC105630877 isoform X2 [Jatropha curcas]
17 Hb_003430_070 0.1392572494 - - PREDICTED: protein phosphatase 2C 37 [Jatropha curcas]
18 Hb_000836_220 0.1400943773 - - UDP-glucosyltransferase, putative [Ricinus communis]
19 Hb_001357_060 0.1410695132 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 18-like [Cicer arietinum]
20 Hb_002234_200 0.1425197813 - - PREDICTED: inactive rhomboid protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_003633_150 Hb_003633_150 Hb_009476_110 Hb_009476_110 Hb_003633_150--Hb_009476_110 Hb_001247_160 Hb_001247_160 Hb_003633_150--Hb_001247_160 Hb_005282_010 Hb_005282_010 Hb_003633_150--Hb_005282_010 Hb_182970_010 Hb_182970_010 Hb_003633_150--Hb_182970_010 Hb_000567_110 Hb_000567_110 Hb_003633_150--Hb_000567_110 Hb_001405_060 Hb_001405_060 Hb_003633_150--Hb_001405_060 Hb_000776_050 Hb_000776_050 Hb_009476_110--Hb_000776_050 Hb_031108_010 Hb_031108_010 Hb_009476_110--Hb_031108_010 Hb_001898_010 Hb_001898_010 Hb_009476_110--Hb_001898_010 Hb_005375_070 Hb_005375_070 Hb_009476_110--Hb_005375_070 Hb_003905_040 Hb_003905_040 Hb_009476_110--Hb_003905_040 Hb_000985_140 Hb_000985_140 Hb_001247_160--Hb_000985_140 Hb_021254_020 Hb_021254_020 Hb_001247_160--Hb_021254_020 Hb_001019_020 Hb_001019_020 Hb_001247_160--Hb_001019_020 Hb_002936_030 Hb_002936_030 Hb_001247_160--Hb_002936_030 Hb_003078_070 Hb_003078_070 Hb_001247_160--Hb_003078_070 Hb_005282_010--Hb_001405_060 Hb_002234_200 Hb_002234_200 Hb_005282_010--Hb_002234_200 Hb_000373_250 Hb_000373_250 Hb_005282_010--Hb_000373_250 Hb_002849_110 Hb_002849_110 Hb_005282_010--Hb_002849_110 Hb_098160_010 Hb_098160_010 Hb_005282_010--Hb_098160_010 Hb_002400_040 Hb_002400_040 Hb_182970_010--Hb_002400_040 Hb_001329_080 Hb_001329_080 Hb_182970_010--Hb_001329_080 Hb_001226_170 Hb_001226_170 Hb_182970_010--Hb_001226_170 Hb_003209_090 Hb_003209_090 Hb_182970_010--Hb_003209_090 Hb_005408_080 Hb_005408_080 Hb_182970_010--Hb_005408_080 Hb_000024_020 Hb_000024_020 Hb_000567_110--Hb_000024_020 Hb_006573_280 Hb_006573_280 Hb_000567_110--Hb_006573_280 Hb_004724_300 Hb_004724_300 Hb_000567_110--Hb_004724_300 Hb_004112_050 Hb_004112_050 Hb_000567_110--Hb_004112_050 Hb_005694_150 Hb_005694_150 Hb_000567_110--Hb_005694_150 Hb_001405_060--Hb_002234_200 Hb_001405_060--Hb_098160_010 Hb_001405_060--Hb_002849_110 Hb_001405_060--Hb_000373_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.13176 59.9187 32.2732 39.2956 0.157874 0.733654
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.94799 1.53254 1.82876 9.01954 13.3893

CAGE analysis