Hb_003633_170

Information

Type -
Description -
Location Contig3633: 148974-149495
Sequence    

Annotation

kegg
ID rcu:RCOM_1433860
description hypothetical protein
nr
ID XP_002512452.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M015
description Uncharacterized protein At5g01610 OS=Arabidopsis thaliana GN=At5g01610 PE=1 SV=1
trembl
ID B9RFD3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1433860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37380: 148873-149486
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003633_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_031224_010 0.032960822 - - -
3 Hb_007370_010 0.0661919277 - - PREDICTED: indole-3-pyruvate monooxygenase YUCCA6 [Jatropha curcas]
4 Hb_002566_020 0.0830192555 - - hypothetical protein JCGZ_15085 [Jatropha curcas]
5 Hb_008304_050 0.0881601922 - - PREDICTED: trans-cinnamate 4-monooxygenase [Jatropha curcas]
6 Hb_004893_010 0.0884709403 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
7 Hb_003894_180 0.0903227383 - - PREDICTED: uncharacterized protein LOC104245193, partial [Nicotiana sylvestris]
8 Hb_004667_030 0.0950078467 - - hypothetical protein VITISV_034568 [Vitis vinifera]
9 Hb_002370_050 0.1008163248 - - hypothetical protein JCGZ_18849 [Jatropha curcas]
10 Hb_009456_010 0.1020805549 - - PREDICTED: cinnamoyl-CoA reductase 1-like isoform X3 [Populus euphratica]
11 Hb_000329_010 0.1039475587 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
12 Hb_005545_110 0.1073283393 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
13 Hb_000389_100 0.109737283 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
14 Hb_002783_180 0.1116807991 - - Tubulin beta-6 chain [Gossypium arboreum]
15 Hb_002809_080 0.1117206336 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000152_570 0.117657658 - - 21 kDa protein precursor, putative [Ricinus communis]
17 Hb_009641_040 0.1178913436 - - PREDICTED: uncharacterized protein LOC105633355 [Jatropha curcas]
18 Hb_141194_020 0.1182470696 - - carbohydrate transporter, putative [Ricinus communis]
19 Hb_000103_300 0.1191780786 - - PREDICTED: perakine reductase-like [Jatropha curcas]
20 Hb_169077_030 0.1278174947 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein RF9 [Jatropha curcas]

Gene co-expression network

sample Hb_003633_170 Hb_003633_170 Hb_031224_010 Hb_031224_010 Hb_003633_170--Hb_031224_010 Hb_007370_010 Hb_007370_010 Hb_003633_170--Hb_007370_010 Hb_002566_020 Hb_002566_020 Hb_003633_170--Hb_002566_020 Hb_008304_050 Hb_008304_050 Hb_003633_170--Hb_008304_050 Hb_004893_010 Hb_004893_010 Hb_003633_170--Hb_004893_010 Hb_003894_180 Hb_003894_180 Hb_003633_170--Hb_003894_180 Hb_000329_010 Hb_000329_010 Hb_031224_010--Hb_000329_010 Hb_031224_010--Hb_002566_020 Hb_031224_010--Hb_007370_010 Hb_002370_050 Hb_002370_050 Hb_031224_010--Hb_002370_050 Hb_002809_080 Hb_002809_080 Hb_031224_010--Hb_002809_080 Hb_007370_010--Hb_003894_180 Hb_169077_030 Hb_169077_030 Hb_007370_010--Hb_169077_030 Hb_000152_570 Hb_000152_570 Hb_007370_010--Hb_000152_570 Hb_000103_300 Hb_000103_300 Hb_007370_010--Hb_000103_300 Hb_009456_010 Hb_009456_010 Hb_002566_020--Hb_009456_010 Hb_002783_180 Hb_002783_180 Hb_002566_020--Hb_002783_180 Hb_000389_100 Hb_000389_100 Hb_002566_020--Hb_000389_100 Hb_002566_020--Hb_007370_010 Hb_008304_050--Hb_000389_100 Hb_008304_050--Hb_004893_010 Hb_008304_050--Hb_002566_020 Hb_008304_050--Hb_031224_010 Hb_008304_050--Hb_002783_180 Hb_032260_130 Hb_032260_130 Hb_004893_010--Hb_032260_130 Hb_004893_010--Hb_031224_010 Hb_164117_010 Hb_164117_010 Hb_004893_010--Hb_164117_010 Hb_003304_090 Hb_003304_090 Hb_004893_010--Hb_003304_090 Hb_003894_180--Hb_000152_570 Hb_004466_090 Hb_004466_090 Hb_003894_180--Hb_004466_090 Hb_002284_060 Hb_002284_060 Hb_003894_180--Hb_002284_060 Hb_003894_180--Hb_000103_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.63067 5.97493 25.7516 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 10.2221 12.2458

CAGE analysis