Hb_003636_040

Information

Type -
Description -
Location Contig3636: 26680-37668
Sequence    

Annotation

kegg
ID rcu:RCOM_0477800
description mitochondrial translational initiation factor, putative
nr
ID XP_002532827.1
description mitochondrial translational initiation factor, putative [Ricinus communis]
swissprot
ID Q9SHI1
description Translation initiation factor IF-2, chloroplastic OS=Arabidopsis thaliana GN=At1g17220 PE=2 SV=2
trembl
ID B9T3K8
description Translation initiation factor IF-2 OS=Ricinus communis GN=RCOM_0477800 PE=3 SV=1
Gene Ontology
ID GO:0044434
description translation initiation factor if- chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003636_040 0.0 - - mitochondrial translational initiation factor, putative [Ricinus communis]
2 Hb_000940_140 0.1451534622 - - PREDICTED: uncharacterized protein LOC105629655 [Jatropha curcas]
3 Hb_063405_020 0.2861770794 - - PREDICTED: uncharacterized protein LOC105155919 [Sesamum indicum]
4 Hb_000640_030 0.3247204827 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_123046_010 0.3260562856 - - PREDICTED: uncharacterized protein LOC105801076 [Gossypium raimondii]
6 Hb_067769_010 0.335441416 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
7 Hb_069251_010 0.3427263203 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_002360_020 0.3433803229 - - ABC transporter family protein [Hevea brasiliensis]
9 Hb_003944_020 0.3450689864 - - PREDICTED: uncharacterized protein LOC105110580 [Populus euphratica]
10 Hb_057451_040 0.3481502257 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_004212_040 0.3491065382 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
12 Hb_002360_030 0.3496977062 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
13 Hb_115656_010 0.3505472238 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
14 Hb_001157_100 0.352160076 - - PREDICTED: uncharacterized protein LOC104887185 [Beta vulgaris subsp. vulgaris]
15 Hb_001446_010 0.3521682848 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_000690_120 0.3530760483 desease resistance Gene Name: NB-ARC unnamed protein product [Coffea canephora]
17 Hb_000827_060 0.3542000356 - - hypothetical protein POPTR_2151s00200g [Populus trichocarpa]
18 Hb_005396_060 0.3621341157 - - -
19 Hb_002791_020 0.3628311297 - - hypothetical protein AALP_AA5G271700 [Arabis alpina]
20 Hb_019656_010 0.3633643137 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_003636_040 Hb_003636_040 Hb_000940_140 Hb_000940_140 Hb_003636_040--Hb_000940_140 Hb_063405_020 Hb_063405_020 Hb_003636_040--Hb_063405_020 Hb_000640_030 Hb_000640_030 Hb_003636_040--Hb_000640_030 Hb_123046_010 Hb_123046_010 Hb_003636_040--Hb_123046_010 Hb_067769_010 Hb_067769_010 Hb_003636_040--Hb_067769_010 Hb_069251_010 Hb_069251_010 Hb_003636_040--Hb_069251_010 Hb_001172_090 Hb_001172_090 Hb_000940_140--Hb_001172_090 Hb_000940_140--Hb_063405_020 Hb_000940_140--Hb_069251_010 Hb_000690_120 Hb_000690_120 Hb_000940_140--Hb_000690_120 Hb_000940_140--Hb_123046_010 Hb_002360_030 Hb_002360_030 Hb_063405_020--Hb_002360_030 Hb_011310_080 Hb_011310_080 Hb_063405_020--Hb_011310_080 Hb_002188_140 Hb_002188_140 Hb_063405_020--Hb_002188_140 Hb_000001_130 Hb_000001_130 Hb_063405_020--Hb_000001_130 Hb_001114_040 Hb_001114_040 Hb_063405_020--Hb_001114_040 Hb_007054_050 Hb_007054_050 Hb_063405_020--Hb_007054_050 Hb_000827_060 Hb_000827_060 Hb_000640_030--Hb_000827_060 Hb_006569_050 Hb_006569_050 Hb_000640_030--Hb_006569_050 Hb_001916_070 Hb_001916_070 Hb_000640_030--Hb_001916_070 Hb_000404_040 Hb_000404_040 Hb_000640_030--Hb_000404_040 Hb_026698_030 Hb_026698_030 Hb_000640_030--Hb_026698_030 Hb_010998_020 Hb_010998_020 Hb_000640_030--Hb_010998_020 Hb_131102_010 Hb_131102_010 Hb_123046_010--Hb_131102_010 Hb_133820_010 Hb_133820_010 Hb_123046_010--Hb_133820_010 Hb_003523_040 Hb_003523_040 Hb_123046_010--Hb_003523_040 Hb_154726_010 Hb_154726_010 Hb_123046_010--Hb_154726_010 Hb_159036_010 Hb_159036_010 Hb_123046_010--Hb_159036_010 Hb_170559_010 Hb_170559_010 Hb_123046_010--Hb_170559_010 Hb_002571_090 Hb_002571_090 Hb_067769_010--Hb_002571_090 Hb_000504_130 Hb_000504_130 Hb_067769_010--Hb_000504_130 Hb_000065_050 Hb_000065_050 Hb_067769_010--Hb_000065_050 Hb_000574_550 Hb_000574_550 Hb_067769_010--Hb_000574_550 Hb_000205_340 Hb_000205_340 Hb_067769_010--Hb_000205_340 Hb_000296_060 Hb_000296_060 Hb_067769_010--Hb_000296_060 Hb_001780_120 Hb_001780_120 Hb_069251_010--Hb_001780_120 Hb_020334_010 Hb_020334_010 Hb_069251_010--Hb_020334_010 Hb_010080_080 Hb_010080_080 Hb_069251_010--Hb_010080_080 Hb_003294_100 Hb_003294_100 Hb_069251_010--Hb_003294_100 Hb_029510_040 Hb_029510_040 Hb_069251_010--Hb_029510_040 Hb_001357_010 Hb_001357_010 Hb_069251_010--Hb_001357_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0101494 0 0 0 0.00895329
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0232519 0 0.0346677 0.0218414 0.0386331

CAGE analysis