Hb_003636_050

Information

Type -
Description -
Location Contig3636: 38630-41293
Sequence    

Annotation

kegg
ID pop:POPTR_0008s02860g
description hypothetical protein
nr
ID XP_011031565.1
description PREDICTED: bark storage protein A-like [Populus euphratica]
swissprot
ID -
description -
trembl
ID U5G770
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0008s02860g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003636_050 0.0 - - PREDICTED: bark storage protein A-like [Populus euphratica]
2 Hb_076583_010 0.1553030653 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
3 Hb_005542_020 0.1751997367 - - lupus la ribonucleoprotein, putative [Ricinus communis]
4 Hb_013727_010 0.1754366723 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
5 Hb_064951_010 0.1768026366 - - PREDICTED: uncharacterized protein LOC103699089, partial [Phoenix dactylifera]
6 Hb_105480_010 0.1795739342 - - -
7 Hb_111332_010 0.183430147 - - Dihydroneopterin aldolase [Morus notabilis]
8 Hb_009268_110 0.1878784783 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
9 Hb_089491_010 0.188596077 - - -
10 Hb_000246_140 0.189261013 - - xylulose kinase, putative [Ricinus communis]
11 Hb_128173_010 0.1932313845 - - PREDICTED: uncharacterized protein LOC104219073 [Nicotiana sylvestris]
12 Hb_007761_010 0.1944098354 - - -
13 Hb_124567_010 0.1963594412 - - -
14 Hb_010997_050 0.1994423928 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
15 Hb_130775_010 0.2050573937 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000004_140 0.2054798805 - - -
17 Hb_136856_010 0.2066870911 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
18 Hb_021068_020 0.2166821154 - - -
19 Hb_098842_010 0.2263666467 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
20 Hb_009066_010 0.2293841087 - - -

Gene co-expression network

sample Hb_003636_050 Hb_003636_050 Hb_076583_010 Hb_076583_010 Hb_003636_050--Hb_076583_010 Hb_005542_020 Hb_005542_020 Hb_003636_050--Hb_005542_020 Hb_013727_010 Hb_013727_010 Hb_003636_050--Hb_013727_010 Hb_064951_010 Hb_064951_010 Hb_003636_050--Hb_064951_010 Hb_105480_010 Hb_105480_010 Hb_003636_050--Hb_105480_010 Hb_111332_010 Hb_111332_010 Hb_003636_050--Hb_111332_010 Hb_076583_010--Hb_064951_010 Hb_010997_050 Hb_010997_050 Hb_076583_010--Hb_010997_050 Hb_009268_110 Hb_009268_110 Hb_076583_010--Hb_009268_110 Hb_089491_010 Hb_089491_010 Hb_076583_010--Hb_089491_010 Hb_076583_010--Hb_013727_010 Hb_003529_210 Hb_003529_210 Hb_076583_010--Hb_003529_210 Hb_005542_020--Hb_105480_010 Hb_005542_020--Hb_111332_010 Hb_005542_020--Hb_013727_010 Hb_128173_010 Hb_128173_010 Hb_005542_020--Hb_128173_010 Hb_007761_010 Hb_007761_010 Hb_005542_020--Hb_007761_010 Hb_005542_020--Hb_009268_110 Hb_013727_010--Hb_009268_110 Hb_013727_010--Hb_089491_010 Hb_013727_010--Hb_105480_010 Hb_013727_010--Hb_111332_010 Hb_136856_010 Hb_136856_010 Hb_013727_010--Hb_136856_010 Hb_066784_020 Hb_066784_020 Hb_064951_010--Hb_066784_020 Hb_064951_010--Hb_003529_210 Hb_064951_010--Hb_010997_050 Hb_064951_010--Hb_089491_010 Hb_064951_010--Hb_009268_110 Hb_105480_010--Hb_111332_010 Hb_105480_010--Hb_128173_010 Hb_105480_010--Hb_007761_010 Hb_105480_010--Hb_009268_110 Hb_111332_010--Hb_128173_010 Hb_111332_010--Hb_007761_010 Hb_006692_050 Hb_006692_050 Hb_111332_010--Hb_006692_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221277 0 0 0 1.97249 7.99562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.405578 0 0 0

CAGE analysis