Hb_003636_070

Information

Type -
Description -
Location Contig3636: 43257-43580
Sequence    

Annotation

kegg
ID rcu:RCOM_0467080
description hypothetical protein
nr
ID XP_002528062.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SPZ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0467080 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase-like protein ccr3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003636_070 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000975_150 0.2558302996 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH8 isoform X1 [Jatropha curcas]
3 Hb_003096_050 0.2568577028 - - conserved hypothetical protein [Ricinus communis]
4 Hb_010647_010 0.2578847053 - - PREDICTED: protein NP24-like [Eucalyptus grandis]
5 Hb_007520_040 0.2579172444 - - PREDICTED: carbonic anhydrase 2-like [Jatropha curcas]
6 Hb_000445_450 0.2607225984 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase-like [Jatropha curcas]
7 Hb_002311_240 0.262658774 - - hypothetical protein JCGZ_18937 [Jatropha curcas]
8 Hb_002233_040 0.265125805 - - PREDICTED: uncharacterized protein LOC105629659 [Jatropha curcas]
9 Hb_001190_060 0.2716456144 transcription factor TF Family: GRAS PREDICTED: nodulation-signaling pathway 1 protein [Jatropha curcas]
10 Hb_007439_010 0.2748716626 transcription factor TF Family: MYB-related PREDICTED: transcription factor RAX2-like [Populus euphratica]
11 Hb_000816_120 0.2757417851 - - PREDICTED: uncharacterized protein LOC105649214 [Jatropha curcas]
12 Hb_006355_030 0.2757501111 transcription factor TF Family: Orphans sensory transduction histidine kinase bacterial, putative [Ricinus communis]
13 Hb_002876_310 0.2781951088 - - hypothetical protein JCGZ_03912 [Jatropha curcas]
14 Hb_007894_250 0.2854674017 - - hypothetical protein JCGZ_06575 [Jatropha curcas]
15 Hb_001250_140 0.2986413323 - - PREDICTED: cysteine-rich receptor-like protein kinase 2 [Jatropha curcas]
16 Hb_000213_130 0.2995206463 transcription factor TF Family: HSF Heat Stress Transcription Factor family protein [Populus trichocarpa]
17 Hb_000758_040 0.3021783316 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF098 [Jatropha curcas]
18 Hb_000056_330 0.3025877886 - - unnamed protein product [Vitis vinifera]
19 Hb_002006_140 0.304472589 transcription factor TF Family: ERF hypothetical protein POPTR_0012s11030g [Populus trichocarpa]
20 Hb_000011_430 0.3052801816 - - zinc finger protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003636_070 Hb_003636_070 Hb_000975_150 Hb_000975_150 Hb_003636_070--Hb_000975_150 Hb_003096_050 Hb_003096_050 Hb_003636_070--Hb_003096_050 Hb_010647_010 Hb_010647_010 Hb_003636_070--Hb_010647_010 Hb_007520_040 Hb_007520_040 Hb_003636_070--Hb_007520_040 Hb_000445_450 Hb_000445_450 Hb_003636_070--Hb_000445_450 Hb_002311_240 Hb_002311_240 Hb_003636_070--Hb_002311_240 Hb_004800_170 Hb_004800_170 Hb_000975_150--Hb_004800_170 Hb_000975_150--Hb_003096_050 Hb_007894_250 Hb_007894_250 Hb_000975_150--Hb_007894_250 Hb_000056_330 Hb_000056_330 Hb_000975_150--Hb_000056_330 Hb_000390_260 Hb_000390_260 Hb_000975_150--Hb_000390_260 Hb_001190_060 Hb_001190_060 Hb_000975_150--Hb_001190_060 Hb_003096_050--Hb_001190_060 Hb_003096_050--Hb_000056_330 Hb_003096_050--Hb_007894_250 Hb_000816_120 Hb_000816_120 Hb_003096_050--Hb_000816_120 Hb_003096_050--Hb_002311_240 Hb_010647_010--Hb_002311_240 Hb_000019_220 Hb_000019_220 Hb_010647_010--Hb_000019_220 Hb_012707_050 Hb_012707_050 Hb_010647_010--Hb_012707_050 Hb_001250_140 Hb_001250_140 Hb_010647_010--Hb_001250_140 Hb_073171_020 Hb_073171_020 Hb_010647_010--Hb_073171_020 Hb_000213_130 Hb_000213_130 Hb_010647_010--Hb_000213_130 Hb_007520_040--Hb_000445_450 Hb_006355_030 Hb_006355_030 Hb_007520_040--Hb_006355_030 Hb_000500_110 Hb_000500_110 Hb_007520_040--Hb_000500_110 Hb_003057_080 Hb_003057_080 Hb_007520_040--Hb_003057_080 Hb_007520_040--Hb_000213_130 Hb_002876_310 Hb_002876_310 Hb_007520_040--Hb_002876_310 Hb_000445_450--Hb_006355_030 Hb_000445_450--Hb_002876_310 Hb_002249_180 Hb_002249_180 Hb_000445_450--Hb_002249_180 Hb_000445_450--Hb_000213_130 Hb_007072_020 Hb_007072_020 Hb_000445_450--Hb_007072_020 Hb_002311_240--Hb_000019_220 Hb_002311_240--Hb_001250_140 Hb_002311_240--Hb_003057_080 Hb_005000_310 Hb_005000_310 Hb_002311_240--Hb_005000_310 Hb_000347_550 Hb_000347_550 Hb_002311_240--Hb_000347_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.246829 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.310687 0.9775 0 5.90316 0.393413

CAGE analysis