Hb_003636_090

Information

Type -
Description -
Location Contig3636: 61769-66166
Sequence    

Annotation

kegg
ID rcu:RCOM_1411630
description hypothetical protein
nr
ID XP_012071367.1
description PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
swissprot
ID A5YVF1
description Protein SUPPRESSOR OF GENE SILENCING 3 OS=Solanum lycopersicum GN=SGS3 PE=1 SV=1
trembl
ID A0A067L319
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05052 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37385: 62084-62668 , PASA_asmbl_37386: 63568-65079 , PASA_asmbl_37388: 65492-66350
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003636_090 0.0 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3-like [Jatropha curcas]
2 Hb_002875_090 0.0755218176 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
3 Hb_004738_090 0.0981462939 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000085_340 0.10718983 - - PREDICTED: uncharacterized protein LOC105633038 isoform X1 [Jatropha curcas]
5 Hb_002067_160 0.1130614695 - - Protein MLO, putative [Ricinus communis]
6 Hb_000997_260 0.1131012076 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
7 Hb_000270_400 0.1159660699 - - lipase, putative [Ricinus communis]
8 Hb_001780_060 0.1166756177 - - PREDICTED: uncharacterized protein LOC105631129 [Jatropha curcas]
9 Hb_000352_150 0.1175500837 - - hypothetical protein JCGZ_11641 [Jatropha curcas]
10 Hb_005488_100 0.1202854402 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
11 Hb_002078_430 0.1219956394 - - hypothetical protein PRUPE_ppa014280mg [Prunus persica]
12 Hb_002627_060 0.1241754457 transcription factor TF Family: MYB Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
13 Hb_170116_010 0.1252759728 - - Geranyl diphosphate synthase 1 isoform 2 [Theobroma cacao]
14 Hb_019654_070 0.1290452254 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
15 Hb_003304_080 0.1302574166 transcription factor TF Family: bHLH lMYC3 [Hevea brasiliensis]
16 Hb_000933_140 0.1308671466 - - PREDICTED: uncharacterized protein LOC105630501 [Jatropha curcas]
17 Hb_013479_020 0.1311379 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
18 Hb_007178_010 0.1315009121 - - pseudo-hevein [Hevea brasiliensis]
19 Hb_001454_390 0.1316957667 - - 8-kd dynein light chain, DLC8, pin [Thalassiosira pseudonana CCMP1335]
20 Hb_007810_040 0.1319555148 - - PREDICTED: dolichyl-phosphate beta-glucosyltransferase [Jatropha curcas]

Gene co-expression network

sample Hb_003636_090 Hb_003636_090 Hb_002875_090 Hb_002875_090 Hb_003636_090--Hb_002875_090 Hb_004738_090 Hb_004738_090 Hb_003636_090--Hb_004738_090 Hb_000085_340 Hb_000085_340 Hb_003636_090--Hb_000085_340 Hb_002067_160 Hb_002067_160 Hb_003636_090--Hb_002067_160 Hb_000997_260 Hb_000997_260 Hb_003636_090--Hb_000997_260 Hb_000270_400 Hb_000270_400 Hb_003636_090--Hb_000270_400 Hb_000352_150 Hb_000352_150 Hb_002875_090--Hb_000352_150 Hb_001780_060 Hb_001780_060 Hb_002875_090--Hb_001780_060 Hb_001454_390 Hb_001454_390 Hb_002875_090--Hb_001454_390 Hb_170116_010 Hb_170116_010 Hb_002875_090--Hb_170116_010 Hb_003304_080 Hb_003304_080 Hb_002875_090--Hb_003304_080 Hb_004738_090--Hb_002067_160 Hb_004738_090--Hb_000085_340 Hb_000264_190 Hb_000264_190 Hb_004738_090--Hb_000264_190 Hb_002232_180 Hb_002232_180 Hb_004738_090--Hb_002232_180 Hb_010931_100 Hb_010931_100 Hb_004738_090--Hb_010931_100 Hb_178968_150 Hb_178968_150 Hb_004738_090--Hb_178968_150 Hb_000085_340--Hb_002067_160 Hb_005754_020 Hb_005754_020 Hb_000085_340--Hb_005754_020 Hb_002391_110 Hb_002391_110 Hb_000085_340--Hb_002391_110 Hb_002377_040 Hb_002377_040 Hb_000085_340--Hb_002377_040 Hb_026048_090 Hb_026048_090 Hb_000085_340--Hb_026048_090 Hb_000176_140 Hb_000176_140 Hb_000085_340--Hb_000176_140 Hb_005488_100 Hb_005488_100 Hb_002067_160--Hb_005488_100 Hb_007178_010 Hb_007178_010 Hb_002067_160--Hb_007178_010 Hb_002067_160--Hb_026048_090 Hb_002067_160--Hb_002232_180 Hb_019516_040 Hb_019516_040 Hb_000997_260--Hb_019516_040 Hb_002518_250 Hb_002518_250 Hb_000997_260--Hb_002518_250 Hb_001140_160 Hb_001140_160 Hb_000997_260--Hb_001140_160 Hb_000933_140 Hb_000933_140 Hb_000997_260--Hb_000933_140 Hb_000997_260--Hb_000085_340 Hb_000523_020 Hb_000523_020 Hb_000270_400--Hb_000523_020 Hb_007545_210 Hb_007545_210 Hb_000270_400--Hb_007545_210 Hb_126669_010 Hb_126669_010 Hb_000270_400--Hb_126669_010 Hb_004254_040 Hb_004254_040 Hb_000270_400--Hb_004254_040 Hb_000172_610 Hb_000172_610 Hb_000270_400--Hb_000172_610 Hb_002627_060 Hb_002627_060 Hb_000270_400--Hb_002627_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
148.056 2.02251 4.70377 4.23771 80.6064 97.2923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.6147 47.4759 36.8293 4.61572 6.24495

CAGE analysis