Hb_003638_030

Information

Type -
Description -
Location Contig3638: 45386-50812
Sequence    

Annotation

kegg
ID rcu:RCOM_1686840
description mitochondrial carrier protein, putative
nr
ID XP_012086897.1
description PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
swissprot
ID F4HT41
description Probable S-adenosylmethionine carrier 2, chloroplastic OS=Arabidopsis thaliana GN=SAMC2 PE=2 SV=1
trembl
ID A0A067K0V5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20590 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial carrier

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37400: 46222-48276
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003638_030 0.0 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
2 Hb_002207_100 0.0596306622 - - PREDICTED: DNA-directed RNA polymerase V subunit 5A-like [Jatropha curcas]
3 Hb_000805_090 0.0670579232 - - hypothetical protein POPTR_0009s03890g [Populus trichocarpa]
4 Hb_026048_100 0.0818453395 - - PREDICTED: putative cell division cycle ATPase [Jatropha curcas]
5 Hb_000172_400 0.0845198963 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
6 Hb_162275_010 0.0882080305 - - -
7 Hb_000700_090 0.0903955884 - - protein with unknown function [Ricinus communis]
8 Hb_011174_070 0.0916643883 - - PREDICTED: pentatricopeptide repeat-containing protein At5g06540-like [Jatropha curcas]
9 Hb_002357_040 0.0938395907 - - latex-abundant protein [Hevea brasiliensis]
10 Hb_000696_110 0.0939888864 - - PREDICTED: la-related protein 1C-like isoform X1 [Jatropha curcas]
11 Hb_000057_060 0.0962477987 - - PREDICTED: uncharacterized protein LOC105634990 isoform X4 [Jatropha curcas]
12 Hb_001981_090 0.0989524492 - - PREDICTED: nucleolar GTP-binding protein 1-like [Prunus mume]
13 Hb_000608_120 0.1009673819 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
14 Hb_004586_190 0.1021688133 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
15 Hb_000809_040 0.1027075511 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
16 Hb_001433_170 0.1028697303 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
17 Hb_000152_140 0.1034486733 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
18 Hb_003861_080 0.1037295232 - - PREDICTED: DNA polymerase kappa isoform X2 [Jatropha curcas]
19 Hb_127979_010 0.1037434738 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
20 Hb_003581_140 0.104942705 - - PREDICTED: hypersensitive-induced response protein 1-like [Nelumbo nucifera]

Gene co-expression network

sample Hb_003638_030 Hb_003638_030 Hb_002207_100 Hb_002207_100 Hb_003638_030--Hb_002207_100 Hb_000805_090 Hb_000805_090 Hb_003638_030--Hb_000805_090 Hb_026048_100 Hb_026048_100 Hb_003638_030--Hb_026048_100 Hb_000172_400 Hb_000172_400 Hb_003638_030--Hb_000172_400 Hb_162275_010 Hb_162275_010 Hb_003638_030--Hb_162275_010 Hb_000700_090 Hb_000700_090 Hb_003638_030--Hb_000700_090 Hb_002207_100--Hb_000172_400 Hb_098709_010 Hb_098709_010 Hb_002207_100--Hb_098709_010 Hb_033491_010 Hb_033491_010 Hb_002207_100--Hb_033491_010 Hb_000365_360 Hb_000365_360 Hb_002207_100--Hb_000365_360 Hb_000035_380 Hb_000035_380 Hb_002207_100--Hb_000035_380 Hb_001981_090 Hb_001981_090 Hb_000805_090--Hb_001981_090 Hb_002357_040 Hb_002357_040 Hb_000805_090--Hb_002357_040 Hb_000809_040 Hb_000809_040 Hb_000805_090--Hb_000809_040 Hb_011174_070 Hb_011174_070 Hb_000805_090--Hb_011174_070 Hb_003861_080 Hb_003861_080 Hb_000805_090--Hb_003861_080 Hb_066807_010 Hb_066807_010 Hb_026048_100--Hb_066807_010 Hb_006602_020 Hb_006602_020 Hb_026048_100--Hb_006602_020 Hb_026048_100--Hb_000700_090 Hb_000057_060 Hb_000057_060 Hb_026048_100--Hb_000057_060 Hb_026048_100--Hb_000172_400 Hb_000784_090 Hb_000784_090 Hb_000172_400--Hb_000784_090 Hb_001454_060 Hb_001454_060 Hb_000172_400--Hb_001454_060 Hb_000340_510 Hb_000340_510 Hb_000172_400--Hb_000340_510 Hb_001030_120 Hb_001030_120 Hb_000172_400--Hb_001030_120 Hb_001804_060 Hb_001804_060 Hb_162275_010--Hb_001804_060 Hb_162275_010--Hb_000057_060 Hb_002391_110 Hb_002391_110 Hb_162275_010--Hb_002391_110 Hb_000696_110 Hb_000696_110 Hb_162275_010--Hb_000696_110 Hb_127979_010 Hb_127979_010 Hb_162275_010--Hb_127979_010 Hb_000700_090--Hb_006602_020 Hb_001902_050 Hb_001902_050 Hb_000700_090--Hb_001902_050 Hb_000152_140 Hb_000152_140 Hb_000700_090--Hb_000152_140 Hb_004735_010 Hb_004735_010 Hb_000700_090--Hb_004735_010 Hb_000700_090--Hb_098709_010 Hb_000700_090--Hb_000696_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.3357 2.96778 1.16155 0.599565 10.8269 13.769
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.2515 8.34949 12.3974 3.76914 0.877779

CAGE analysis