Hb_003638_080

Information

Type -
Description -
Location Contig3638: 124737-126926
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13340g
description hypothetical protein
nr
ID XP_006381490.1
description hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
swissprot
ID Q8RV04
description Mitochondrial import inner membrane translocase subunit TIM14-1 OS=Arabidopsis thaliana GN=TIM14-1 PE=1 SV=1
trembl
ID B9MT90
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s13340g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37405: 124737-126900
cDNA
(Sanger)
(ID:Location)		 005_O14.ab1: 124737-126900 , 009_M05.ab1: 124737-126900 , 051_E10.ab1: 124737-126900

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003638_080 0.0 - - hypothetical protein POPTR_0006s13340g [Populus trichocarpa]
2 Hb_000699_040 0.1045014298 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
3 Hb_000134_020 0.1076312447 - - thioredoxin-like family protein [Hevea brasiliensis]
4 Hb_000236_460 0.1092682179 - - PREDICTED: uncharacterized protein LOC105633119 isoform X1 [Jatropha curcas]
5 Hb_000617_050 0.1095191146 - - PREDICTED: uncharacterized protein LOC105647466 [Jatropha curcas]
6 Hb_001053_160 0.1116717968 - - hypothetical protein POPTR_0009s06660g [Populus trichocarpa]
7 Hb_001214_140 0.1122959209 - - 60S ribosomal protein L27a, putative [Ricinus communis]
8 Hb_004958_050 0.1127803096 - - hypothetical protein CICLE_v10032980mg [Citrus clementina]
9 Hb_097007_010 0.113020893 - - hypothetical protein CARUB_v10018269mg, partial [Capsella rubella]
10 Hb_002293_030 0.1175870113 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
11 Hb_005463_060 0.1205043518 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
12 Hb_000526_150 0.1244130806 - - hypothetical protein POPTR_0019s10790g, partial [Populus trichocarpa]
13 Hb_002876_360 0.1245646164 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
14 Hb_011689_050 0.1262577118 - - hypothetical protein POPTR_0008s20290g [Populus trichocarpa]
15 Hb_003988_040 0.127749901 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
16 Hb_001616_020 0.129105393 - - PREDICTED: wound-induced basic protein [Jatropha curcas]
17 Hb_002716_090 0.129372426 - - U6 snRNA-associated Sm-like protein LSm8 [Hevea brasiliensis]
18 Hb_003549_020 0.1301290293 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004005_010 0.132025701 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
20 Hb_004724_160 0.1320855514 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]

Gene co-expression network

sample Hb_003638_080 Hb_003638_080 Hb_000699_040 Hb_000699_040 Hb_003638_080--Hb_000699_040 Hb_000134_020 Hb_000134_020 Hb_003638_080--Hb_000134_020 Hb_000236_460 Hb_000236_460 Hb_003638_080--Hb_000236_460 Hb_000617_050 Hb_000617_050 Hb_003638_080--Hb_000617_050 Hb_001053_160 Hb_001053_160 Hb_003638_080--Hb_001053_160 Hb_001214_140 Hb_001214_140 Hb_003638_080--Hb_001214_140 Hb_004052_020 Hb_004052_020 Hb_000699_040--Hb_004052_020 Hb_000699_040--Hb_001214_140 Hb_012753_230 Hb_012753_230 Hb_000699_040--Hb_012753_230 Hb_001504_050 Hb_001504_050 Hb_000699_040--Hb_001504_050 Hb_004724_160 Hb_004724_160 Hb_000699_040--Hb_004724_160 Hb_000645_190 Hb_000645_190 Hb_000134_020--Hb_000645_190 Hb_011310_060 Hb_011310_060 Hb_000134_020--Hb_011310_060 Hb_003988_040 Hb_003988_040 Hb_000134_020--Hb_003988_040 Hb_002293_030 Hb_002293_030 Hb_000134_020--Hb_002293_030 Hb_003058_220 Hb_003058_220 Hb_000134_020--Hb_003058_220 Hb_003549_020 Hb_003549_020 Hb_000236_460--Hb_003549_020 Hb_187083_010 Hb_187083_010 Hb_000236_460--Hb_187083_010 Hb_021409_090 Hb_021409_090 Hb_000236_460--Hb_021409_090 Hb_097007_010 Hb_097007_010 Hb_000236_460--Hb_097007_010 Hb_000085_330 Hb_000085_330 Hb_000236_460--Hb_000085_330 Hb_001123_120 Hb_001123_120 Hb_000236_460--Hb_001123_120 Hb_002876_360 Hb_002876_360 Hb_000617_050--Hb_002876_360 Hb_002326_180 Hb_002326_180 Hb_000617_050--Hb_002326_180 Hb_003216_100 Hb_003216_100 Hb_000617_050--Hb_003216_100 Hb_009252_130 Hb_009252_130 Hb_000617_050--Hb_009252_130 Hb_004005_010 Hb_004005_010 Hb_000617_050--Hb_004005_010 Hb_005224_050 Hb_005224_050 Hb_001053_160--Hb_005224_050 Hb_000487_320 Hb_000487_320 Hb_001053_160--Hb_000487_320 Hb_005496_030 Hb_005496_030 Hb_001053_160--Hb_005496_030 Hb_001053_160--Hb_000134_020 Hb_001053_160--Hb_003058_220 Hb_002716_090 Hb_002716_090 Hb_001214_140--Hb_002716_090 Hb_000438_220 Hb_000438_220 Hb_001214_140--Hb_000438_220 Hb_001638_260 Hb_001638_260 Hb_001214_140--Hb_001638_260 Hb_002742_050 Hb_002742_050 Hb_001214_140--Hb_002742_050 Hb_001214_140--Hb_004052_020 Hb_003641_020 Hb_003641_020 Hb_001214_140--Hb_003641_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.3771 11.1217 12.9896 15.1081 24.6581 39.1866
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
68.8203 146.872 28.2798 8.43588 1.22468

CAGE analysis