Hb_003638_090

Information

Type -
Description -
Location Contig3638: 134686-138487
Sequence    

Annotation

kegg
ID rcu:RCOM_1687520
description Arginine/serine-rich-splicing factor, putative
nr
ID XP_012086855.1
description PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
swissprot
ID Q84TH4
description Serine/arginine-rich splicing factor SR45a OS=Arabidopsis thaliana GN=SR45A PE=1 SV=1
trembl
ID A0A067JRG2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20564 PE=4 SV=1
Gene Ontology
ID GO:0000166
description serine arginine-rich splicing factor sr45a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37407: 134724-138376 , PASA_asmbl_37408: 137262-138365 , PASA_asmbl_37409: 136742-137597
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003638_090 0.0 - - PREDICTED: serine/arginine-rich splicing factor SR45a-like [Jatropha curcas]
2 Hb_005289_040 0.0475672944 - - poly(A) polymerase, putative [Ricinus communis]
3 Hb_001488_200 0.0619661131 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
4 Hb_019654_040 0.064610316 - - PREDICTED: putative tRNA pseudouridine synthase Pus10 isoform X2 [Jatropha curcas]
5 Hb_002805_190 0.064669314 - - spliceosome associated protein, putative [Ricinus communis]
6 Hb_002374_260 0.0652896217 - - PREDICTED: probable methyltransferase-like protein 15 [Jatropha curcas]
7 Hb_005965_030 0.0674963373 - - hypothetical protein JCGZ_16415 [Jatropha curcas]
8 Hb_000679_340 0.0682387615 - - PREDICTED: uncharacterized protein LOC105650070 isoform X1 [Jatropha curcas]
9 Hb_008568_020 0.0686913031 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
10 Hb_154580_010 0.0705386966 - - hypothetical protein PRUPE_ppa002109mg [Prunus persica]
11 Hb_022256_060 0.070991282 - - PREDICTED: uncharacterized protein LOC105628137 [Jatropha curcas]
12 Hb_000160_350 0.0712040963 - - PREDICTED: double-stranded RNA-binding protein 4 isoform X3 [Vitis vinifera]
13 Hb_000914_120 0.0712696115 - - PREDICTED: outer envelope protein 80, chloroplastic [Jatropha curcas]
14 Hb_000230_090 0.0721738748 - - PREDICTED: WD repeat-containing protein 48 isoform X1 [Jatropha curcas]
15 Hb_000836_410 0.072367778 - - sec10, putative [Ricinus communis]
16 Hb_000960_050 0.0725615987 - - PREDICTED: protein EXPORTIN 1A [Jatropha curcas]
17 Hb_003878_110 0.0729638093 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
18 Hb_002067_030 0.0730907826 - - PREDICTED: poly(ADP-ribose) glycohydrolase 1-like isoform X2 [Jatropha curcas]
19 Hb_002684_040 0.0732508189 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
20 Hb_001635_040 0.07387586 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Gossypium raimondii]

Gene co-expression network

sample Hb_003638_090 Hb_003638_090 Hb_005289_040 Hb_005289_040 Hb_003638_090--Hb_005289_040 Hb_001488_200 Hb_001488_200 Hb_003638_090--Hb_001488_200 Hb_019654_040 Hb_019654_040 Hb_003638_090--Hb_019654_040 Hb_002805_190 Hb_002805_190 Hb_003638_090--Hb_002805_190 Hb_002374_260 Hb_002374_260 Hb_003638_090--Hb_002374_260 Hb_005965_030 Hb_005965_030 Hb_003638_090--Hb_005965_030 Hb_005588_090 Hb_005588_090 Hb_005289_040--Hb_005588_090 Hb_000398_080 Hb_000398_080 Hb_005289_040--Hb_000398_080 Hb_005289_040--Hb_002805_190 Hb_000134_270 Hb_000134_270 Hb_005289_040--Hb_000134_270 Hb_154580_010 Hb_154580_010 Hb_005289_040--Hb_154580_010 Hb_006688_050 Hb_006688_050 Hb_001488_200--Hb_006688_050 Hb_001488_200--Hb_019654_040 Hb_010407_050 Hb_010407_050 Hb_001488_200--Hb_010407_050 Hb_002375_010 Hb_002375_010 Hb_001488_200--Hb_002375_010 Hb_000390_320 Hb_000390_320 Hb_001488_200--Hb_000390_320 Hb_000470_070 Hb_000470_070 Hb_019654_040--Hb_000470_070 Hb_009296_010 Hb_009296_010 Hb_019654_040--Hb_009296_010 Hb_001935_110 Hb_001935_110 Hb_019654_040--Hb_001935_110 Hb_000648_100 Hb_000648_100 Hb_019654_040--Hb_000648_100 Hb_011930_080 Hb_011930_080 Hb_019654_040--Hb_011930_080 Hb_002805_190--Hb_000398_080 Hb_003861_050 Hb_003861_050 Hb_002805_190--Hb_003861_050 Hb_008568_020 Hb_008568_020 Hb_002805_190--Hb_008568_020 Hb_001377_310 Hb_001377_310 Hb_002805_190--Hb_001377_310 Hb_003878_110 Hb_003878_110 Hb_002374_260--Hb_003878_110 Hb_000152_260 Hb_000152_260 Hb_002374_260--Hb_000152_260 Hb_002304_060 Hb_002304_060 Hb_002374_260--Hb_002304_060 Hb_001377_110 Hb_001377_110 Hb_002374_260--Hb_001377_110 Hb_005332_020 Hb_005332_020 Hb_002374_260--Hb_005332_020 Hb_000160_350 Hb_000160_350 Hb_005965_030--Hb_000160_350 Hb_002157_260 Hb_002157_260 Hb_005965_030--Hb_002157_260 Hb_004785_100 Hb_004785_100 Hb_005965_030--Hb_004785_100 Hb_000679_340 Hb_000679_340 Hb_005965_030--Hb_000679_340 Hb_022256_060 Hb_022256_060 Hb_005965_030--Hb_022256_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
40.852 41.6089 54.8546 24.1708 47.2719 52.7603
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
26.1682 23.67 21.9587 39.3919 28.3617

CAGE analysis