Hb_003638_140

Information

Type -
Description -
Location Contig3638: 172320-174844
Sequence    

Annotation

kegg
ID rcu:RCOM_1687500
description protein binding protein, putative
nr
ID XP_002509832.1
description protein binding protein, putative [Ricinus communis]
swissprot
ID Q8LE94
description E3 ubiquitin-protein ligase At3g02290 OS=Arabidopsis thaliana GN=At3g02290 PE=2 SV=1
trembl
ID B9RCE8
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1687500 PE=4 SV=1
Gene Ontology
ID GO:0005739
description e3 ubiquitin-protein ligase at3g02290

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37417: 172293-172874 , PASA_asmbl_37418: 172507-172639 , PASA_asmbl_37419: 172884-174798
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003638_140 0.0 - - protein binding protein, putative [Ricinus communis]
2 Hb_002215_050 0.0667313129 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
3 Hb_001369_060 0.0747214621 - - PREDICTED: uncharacterized Rho GTPase-activating protein At5g61530 [Jatropha curcas]
4 Hb_024714_030 0.0766465774 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
5 Hb_011496_010 0.0781618197 - - PREDICTED: pentatricopeptide repeat-containing protein At2g38420, mitochondrial [Jatropha curcas]
6 Hb_000608_120 0.0801388979 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
7 Hb_001804_060 0.0803460441 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_18059 [Jatropha curcas]
8 Hb_001840_080 0.0812452338 - - hypothetical protein POPTR_0008s14370g [Populus trichocarpa]
9 Hb_127979_010 0.0821657463 - - PREDICTED: uncharacterized protein LOC105629383 [Jatropha curcas]
10 Hb_006637_060 0.0836235687 - - PREDICTED: uncharacterized protein LOC105649300 [Jatropha curcas]
11 Hb_000784_090 0.0840708258 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
12 Hb_002681_140 0.0860845829 - - PREDICTED: surfeit locus protein 2 [Jatropha curcas]
13 Hb_003494_240 0.0861344072 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
14 Hb_002169_010 0.0884533276 - - PREDICTED: la-related protein 6B [Jatropha curcas]
15 Hb_000365_360 0.0885354172 - - PREDICTED: RING finger and transmembrane domain-containing protein 2 isoform X1 [Jatropha curcas]
16 Hb_014568_030 0.0905343506 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
17 Hb_002014_080 0.0905796086 - - PREDICTED: tankyrase-1 isoform X4 [Jatropha curcas]
18 Hb_006816_360 0.090725768 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]
19 Hb_000176_140 0.0913827457 - - PREDICTED: bystin [Jatropha curcas]
20 Hb_000442_160 0.0930235542 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003638_140 Hb_003638_140 Hb_002215_050 Hb_002215_050 Hb_003638_140--Hb_002215_050 Hb_001369_060 Hb_001369_060 Hb_003638_140--Hb_001369_060 Hb_024714_030 Hb_024714_030 Hb_003638_140--Hb_024714_030 Hb_011496_010 Hb_011496_010 Hb_003638_140--Hb_011496_010 Hb_000608_120 Hb_000608_120 Hb_003638_140--Hb_000608_120 Hb_001804_060 Hb_001804_060 Hb_003638_140--Hb_001804_060 Hb_002215_050--Hb_001369_060 Hb_033491_010 Hb_033491_010 Hb_002215_050--Hb_033491_010 Hb_000784_090 Hb_000784_090 Hb_002215_050--Hb_000784_090 Hb_001214_130 Hb_001214_130 Hb_002215_050--Hb_001214_130 Hb_002215_050--Hb_024714_030 Hb_001369_060--Hb_033491_010 Hb_000365_360 Hb_000365_360 Hb_001369_060--Hb_000365_360 Hb_001369_060--Hb_001804_060 Hb_098709_010 Hb_098709_010 Hb_001369_060--Hb_098709_010 Hb_002014_080 Hb_002014_080 Hb_024714_030--Hb_002014_080 Hb_000671_100 Hb_000671_100 Hb_024714_030--Hb_000671_100 Hb_014568_030 Hb_014568_030 Hb_024714_030--Hb_014568_030 Hb_035524_030 Hb_035524_030 Hb_024714_030--Hb_035524_030 Hb_002169_010 Hb_002169_010 Hb_011496_010--Hb_002169_010 Hb_029281_010 Hb_029281_010 Hb_011496_010--Hb_029281_010 Hb_000462_150 Hb_000462_150 Hb_011496_010--Hb_000462_150 Hb_002818_040 Hb_002818_040 Hb_011496_010--Hb_002818_040 Hb_001936_050 Hb_001936_050 Hb_011496_010--Hb_001936_050 Hb_003494_240 Hb_003494_240 Hb_000608_120--Hb_003494_240 Hb_001454_060 Hb_001454_060 Hb_000608_120--Hb_001454_060 Hb_003581_140 Hb_003581_140 Hb_000608_120--Hb_003581_140 Hb_000608_120--Hb_002215_050 Hb_000703_080 Hb_000703_080 Hb_000608_120--Hb_000703_080 Hb_162275_010 Hb_162275_010 Hb_001804_060--Hb_162275_010 Hb_001804_060--Hb_098709_010 Hb_001804_060--Hb_000784_090 Hb_001804_060--Hb_000365_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
114.596 27.5145 8.67122 15.268 78.5724 145.837
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
72.6373 56.6298 65.0322 22.2591 10.0249

CAGE analysis