Hb_003640_010

Information

Type -
Description -
Location Contig3640: 1723-3738
Sequence    

Annotation

kegg
ID rcu:RCOM_1437440
description interferon-induced GTP-binding protein mx, putative
nr
ID XP_002512616.1
description interferon-induced GTP-binding protein mx, putative [Ricinus communis]
swissprot
ID Q9ZP55
description Dynamin-related protein 4C OS=Arabidopsis thaliana GN=DRP4C PE=2 SV=1
trembl
ID B9RFU7
description Interferon-induced GTP-binding protein mx, putative OS=Ricinus communis GN=RCOM_1437440 PE=4 SV=1
Gene Ontology
ID GO:0003924
description dynamin-related protein 4c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37465: 1483-3725
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003640_010 0.0 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
2 Hb_013848_030 0.1017494168 - - PREDICTED: probable aminotransferase TAT2 [Jatropha curcas]
3 Hb_000120_880 0.1114984205 - - PREDICTED: disease resistance response protein 206-like [Jatropha curcas]
4 Hb_003085_080 0.1186432793 - - nucleic acid binding protein, putative [Ricinus communis]
5 Hb_000445_030 0.1273178328 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
6 Hb_002448_020 0.1339817244 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
7 Hb_002622_010 0.1361799576 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR [Jatropha curcas]
8 Hb_000970_020 0.1368065279 - - hypothetical protein POPTR_0005s19050g [Populus trichocarpa]
9 Hb_000155_040 0.1379501599 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
10 Hb_000834_040 0.1413093751 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
11 Hb_000112_050 0.1438770816 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1 [Jatropha curcas]
12 Hb_003562_030 0.1440474812 - - -
13 Hb_004128_090 0.1472448931 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 44 [Jatropha curcas]
14 Hb_099157_010 0.1497615001 - - PREDICTED: uncharacterized protein LOC105630881 [Jatropha curcas]
15 Hb_000215_250 0.1503507463 - - Acid phosphatase 1 precursor, putative [Ricinus communis]
16 Hb_001607_070 0.1522084709 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
17 Hb_002811_020 0.1530164859 - - Cysteine synthase [Morus notabilis]
18 Hb_003398_090 0.1532209623 - - PREDICTED: expansin-A4 [Jatropha curcas]
19 Hb_168319_060 0.1544759627 - - PREDICTED: cytochrome P450 CYP749A22-like [Populus euphratica]
20 Hb_000203_080 0.1556758585 - - Xylem bark cysteine peptidase 3 isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_003640_010 Hb_003640_010 Hb_013848_030 Hb_013848_030 Hb_003640_010--Hb_013848_030 Hb_000120_880 Hb_000120_880 Hb_003640_010--Hb_000120_880 Hb_003085_080 Hb_003085_080 Hb_003640_010--Hb_003085_080 Hb_000445_030 Hb_000445_030 Hb_003640_010--Hb_000445_030 Hb_002448_020 Hb_002448_020 Hb_003640_010--Hb_002448_020 Hb_002622_010 Hb_002622_010 Hb_003640_010--Hb_002622_010 Hb_188281_050 Hb_188281_050 Hb_013848_030--Hb_188281_050 Hb_001189_100 Hb_001189_100 Hb_013848_030--Hb_001189_100 Hb_000215_250 Hb_000215_250 Hb_013848_030--Hb_000215_250 Hb_013848_030--Hb_003085_080 Hb_002811_020 Hb_002811_020 Hb_013848_030--Hb_002811_020 Hb_001607_070 Hb_001607_070 Hb_000120_880--Hb_001607_070 Hb_000254_060 Hb_000254_060 Hb_000120_880--Hb_000254_060 Hb_001778_040 Hb_001778_040 Hb_000120_880--Hb_001778_040 Hb_168319_060 Hb_168319_060 Hb_000120_880--Hb_168319_060 Hb_170878_060 Hb_170878_060 Hb_000120_880--Hb_170878_060 Hb_004128_090 Hb_004128_090 Hb_003085_080--Hb_004128_090 Hb_002475_030 Hb_002475_030 Hb_003085_080--Hb_002475_030 Hb_003842_010 Hb_003842_010 Hb_003085_080--Hb_003842_010 Hb_000203_080 Hb_000203_080 Hb_003085_080--Hb_000203_080 Hb_010839_010 Hb_010839_010 Hb_003085_080--Hb_010839_010 Hb_001014_150 Hb_001014_150 Hb_003085_080--Hb_001014_150 Hb_000445_030--Hb_002622_010 Hb_029576_080 Hb_029576_080 Hb_000445_030--Hb_029576_080 Hb_001660_050 Hb_001660_050 Hb_000445_030--Hb_001660_050 Hb_000445_030--Hb_003085_080 Hb_000445_030--Hb_013848_030 Hb_006846_030 Hb_006846_030 Hb_002448_020--Hb_006846_030 Hb_065521_010 Hb_065521_010 Hb_002448_020--Hb_065521_010 Hb_007386_030 Hb_007386_030 Hb_002448_020--Hb_007386_030 Hb_003847_050 Hb_003847_050 Hb_002448_020--Hb_003847_050 Hb_007875_020 Hb_007875_020 Hb_002448_020--Hb_007875_020 Hb_001114_120 Hb_001114_120 Hb_002448_020--Hb_001114_120 Hb_002622_010--Hb_001660_050 Hb_002622_010--Hb_001607_070 Hb_004943_010 Hb_004943_010 Hb_002622_010--Hb_004943_010 Hb_009659_040 Hb_009659_040 Hb_002622_010--Hb_009659_040 Hb_002622_010--Hb_000203_080 Hb_002622_010--Hb_029576_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.183879 16.7522 16.1147 35.7752 0.246011 0.325136
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.693465 0.897666 2.90447 71.3648 37.6159

CAGE analysis