Hb_003641_010

Information

Type -
Description -
Location Contig3641: 5558-6998
Sequence    

Annotation

kegg
ID rcu:RCOM_0709290
description Pectinesterase-3 precursor, putative (EC:3.1.1.11)
nr
ID XP_002516214.1
description Pectinesterase-3 precursor, putative [Ricinus communis]
swissprot
ID Q84WM7
description Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1
trembl
ID B9RR45
description Pectinesterase OS=Ricinus communis GN=RCOM_0709290 PE=3 SV=1
Gene Ontology
ID GO:0005618
description pectinesterase 63

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37476: 5585-5777
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003641_010 0.0 - - Pectinesterase-3 precursor, putative [Ricinus communis]
2 Hb_000085_120 0.1556438715 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
3 Hb_005263_010 0.1790568538 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Nicotiana sylvestris]
4 Hb_000025_220 0.1940014859 - - hypothetical protein POPTR_0001s28080g [Populus trichocarpa]
5 Hb_097783_010 0.2076474462 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
6 Hb_005368_030 0.2086342513 - - -
7 Hb_000733_260 0.2136735166 - - hypothetical protein JCGZ_26934 [Jatropha curcas]
8 Hb_116367_010 0.213875866 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Pyrus x bretschneideri]
9 Hb_000092_050 0.2329280228 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
10 Hb_133648_010 0.2336153002 - - -
11 Hb_009803_010 0.2351446873 - - hypothetical protein JCGZ_08257 [Jatropha curcas]
12 Hb_000562_010 0.245693892 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
13 Hb_182507_010 0.2459917244 - - -
14 Hb_001660_140 0.2483452294 - - -
15 Hb_003531_010 0.2517884358 - - scab resistance family protein [Populus trichocarpa]
16 Hb_158296_010 0.2610854371 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
17 Hb_013040_010 0.2641343413 - - hypothetical protein POPTR_0009s09690g [Populus trichocarpa]
18 Hb_000270_540 0.2675037711 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
19 Hb_000574_310 0.2689786255 - - hypothetical protein CISIN_1g027539mg [Citrus sinensis]
20 Hb_000025_080 0.2710527942 - - -

Gene co-expression network

sample Hb_003641_010 Hb_003641_010 Hb_000085_120 Hb_000085_120 Hb_003641_010--Hb_000085_120 Hb_005263_010 Hb_005263_010 Hb_003641_010--Hb_005263_010 Hb_000025_220 Hb_000025_220 Hb_003641_010--Hb_000025_220 Hb_097783_010 Hb_097783_010 Hb_003641_010--Hb_097783_010 Hb_005368_030 Hb_005368_030 Hb_003641_010--Hb_005368_030 Hb_000733_260 Hb_000733_260 Hb_003641_010--Hb_000733_260 Hb_005183_090 Hb_005183_090 Hb_000085_120--Hb_005183_090 Hb_015085_010 Hb_015085_010 Hb_000085_120--Hb_015085_010 Hb_125152_010 Hb_125152_010 Hb_000085_120--Hb_125152_010 Hb_000048_120 Hb_000048_120 Hb_000085_120--Hb_000048_120 Hb_009501_010 Hb_009501_010 Hb_000085_120--Hb_009501_010 Hb_005263_010--Hb_005368_030 Hb_005263_010--Hb_000025_220 Hb_182507_010 Hb_182507_010 Hb_005263_010--Hb_182507_010 Hb_001660_140 Hb_001660_140 Hb_005263_010--Hb_001660_140 Hb_009803_010 Hb_009803_010 Hb_005263_010--Hb_009803_010 Hb_013040_010 Hb_013040_010 Hb_005263_010--Hb_013040_010 Hb_000025_220--Hb_009803_010 Hb_000025_220--Hb_000733_260 Hb_000025_220--Hb_005368_030 Hb_000574_310 Hb_000574_310 Hb_000025_220--Hb_000574_310 Hb_000343_170 Hb_000343_170 Hb_097783_010--Hb_000343_170 Hb_133648_010 Hb_133648_010 Hb_097783_010--Hb_133648_010 Hb_097783_010--Hb_000085_120 Hb_002820_130 Hb_002820_130 Hb_097783_010--Hb_002820_130 Hb_007545_200 Hb_007545_200 Hb_097783_010--Hb_007545_200 Hb_005368_030--Hb_182507_010 Hb_005368_030--Hb_001660_140 Hb_005368_030--Hb_013040_010 Hb_000270_540 Hb_000270_540 Hb_005368_030--Hb_000270_540 Hb_004907_030 Hb_004907_030 Hb_005368_030--Hb_004907_030 Hb_000164_200 Hb_000164_200 Hb_000733_260--Hb_000164_200 Hb_000733_260--Hb_000574_310 Hb_000733_260--Hb_005263_010 Hb_068804_170 Hb_068804_170 Hb_000733_260--Hb_068804_170 Hb_000733_260--Hb_000085_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0160016 0 0.212608 0 0.0507724
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis