Hb_003641_020

Information

Type -
Description -
Location Contig3641: 8501-10159
Sequence    

Annotation

kegg
ID pop:POPTR_0006s13960g
description hypothetical protein
nr
ID XP_006381570.1
description hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID B9MT32
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s13960g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37477: 8507-10050
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003641_020 0.0 - - hypothetical protein POPTR_0006s13960g [Populus trichocarpa]
2 Hb_012368_020 0.0510746863 - - PREDICTED: uncharacterized protein LOC105650964 [Jatropha curcas]
3 Hb_000062_650 0.0680059576 - - PREDICTED: uncharacterized protein LOC105628245 [Jatropha curcas]
4 Hb_001638_260 0.0823152244 - - PREDICTED: 60S acidic ribosomal protein P1 [Vitis vinifera]
5 Hb_000438_220 0.0832295548 - - PREDICTED: uncharacterized protein LOC105649213 [Jatropha curcas]
6 Hb_001314_100 0.0850459216 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]
7 Hb_012573_070 0.0872859442 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000012_220 0.087361396 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005511_160 0.0883987074 - - OB-fold nucleic acid binding domain-containing protein [Theobroma cacao]
10 Hb_000127_180 0.0902323721 - - 40S ribosomal protein S18, putative [Ricinus communis]
11 Hb_007044_130 0.0911768164 - - PREDICTED: cyclin-B1-2 [Jatropha curcas]
12 Hb_000029_200 0.0924209423 - - PREDICTED: uncharacterized protein LOC105643943 [Jatropha curcas]
13 Hb_008921_020 0.0932966153 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
14 Hb_002518_050 0.0948638031 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
15 Hb_000510_110 0.096862251 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
16 Hb_005496_030 0.0969579026 - - PREDICTED: 40S ribosomal protein S29-like [Malus domestica]
17 Hb_004223_040 0.0976957518 - - PREDICTED: AP-2 complex subunit sigma [Fragaria vesca subsp. vesca]
18 Hb_003528_060 0.0986336721 - - PREDICTED: uncharacterized protein LOC105638256 isoform X2 [Jatropha curcas]
19 Hb_000487_250 0.0986816238 - - 60S ribosomal protein L27e, putative [Ricinus communis]
20 Hb_134949_020 0.0992824634 - - PREDICTED: thioredoxin-like protein YLS8 [Cucumis sativus]

Gene co-expression network

sample Hb_003641_020 Hb_003641_020 Hb_012368_020 Hb_012368_020 Hb_003641_020--Hb_012368_020 Hb_000062_650 Hb_000062_650 Hb_003641_020--Hb_000062_650 Hb_001638_260 Hb_001638_260 Hb_003641_020--Hb_001638_260 Hb_000438_220 Hb_000438_220 Hb_003641_020--Hb_000438_220 Hb_001314_100 Hb_001314_100 Hb_003641_020--Hb_001314_100 Hb_012573_070 Hb_012573_070 Hb_003641_020--Hb_012573_070 Hb_000975_320 Hb_000975_320 Hb_012368_020--Hb_000975_320 Hb_005511_160 Hb_005511_160 Hb_012368_020--Hb_005511_160 Hb_012368_020--Hb_001314_100 Hb_012368_020--Hb_000062_650 Hb_134949_020 Hb_134949_020 Hb_012368_020--Hb_134949_020 Hb_000506_070 Hb_000506_070 Hb_000062_650--Hb_000506_070 Hb_008921_020 Hb_008921_020 Hb_000062_650--Hb_008921_020 Hb_007044_130 Hb_007044_130 Hb_000062_650--Hb_007044_130 Hb_000735_040 Hb_000735_040 Hb_000062_650--Hb_000735_040 Hb_002588_010 Hb_002588_010 Hb_000062_650--Hb_002588_010 Hb_001269_270 Hb_001269_270 Hb_001638_260--Hb_001269_270 Hb_000283_110 Hb_000283_110 Hb_001638_260--Hb_000283_110 Hb_009554_010 Hb_009554_010 Hb_001638_260--Hb_009554_010 Hb_000526_150 Hb_000526_150 Hb_001638_260--Hb_000526_150 Hb_000545_150 Hb_000545_150 Hb_001638_260--Hb_000545_150 Hb_001818_020 Hb_001818_020 Hb_001638_260--Hb_001818_020 Hb_002316_060 Hb_002316_060 Hb_000438_220--Hb_002316_060 Hb_000438_220--Hb_012368_020 Hb_004129_040 Hb_004129_040 Hb_000438_220--Hb_004129_040 Hb_000307_090 Hb_000307_090 Hb_000438_220--Hb_000307_090 Hb_000438_220--Hb_001638_260 Hb_001314_100--Hb_012573_070 Hb_001369_640 Hb_001369_640 Hb_001314_100--Hb_001369_640 Hb_168054_010 Hb_168054_010 Hb_001314_100--Hb_168054_010 Hb_165132_010 Hb_165132_010 Hb_001314_100--Hb_165132_010 Hb_000029_200 Hb_000029_200 Hb_001314_100--Hb_000029_200 Hb_001314_100--Hb_134949_020 Hb_012573_070--Hb_000545_150 Hb_003528_060 Hb_003528_060 Hb_012573_070--Hb_003528_060 Hb_002518_050 Hb_002518_050 Hb_012573_070--Hb_002518_050 Hb_000926_300 Hb_000926_300 Hb_012573_070--Hb_000926_300 Hb_003683_110 Hb_003683_110 Hb_012573_070--Hb_003683_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.2762 10.7175 11.5807 13.6255 15.0855 18.908
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.9457 65.5825 18.4687 8.94755 5.09735

CAGE analysis