Hb_003641_040

Information

Type -
Description -
Location Contig3641: 27677-28273
Sequence    

Annotation

kegg
ID pop:POPTR_0006s14010g
description hypothetical protein
nr
ID XP_006381574.1
description hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID U5GAM6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s14010g PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37479: 27629-30124 , PASA_asmbl_37480: 27643-28486
cDNA
(Sanger)
(ID:Location)		 004_I15.ab1: 27629-29838 , 016_G15.ab1: 27630-28164 , 024_P19.ab1: 27629-28291 , 036_H19.ab1: 27629-29946

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003641_040 0.0 - - hypothetical protein POPTR_0006s14010g [Populus trichocarpa]
2 Hb_000675_130 0.0717812848 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like isoform X2 [Jatropha curcas]
3 Hb_001969_030 0.0739201081 - - conserved hypothetical protein [Ricinus communis]
4 Hb_008226_050 0.0763446109 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2b [Jatropha curcas]
5 Hb_000853_020 0.0820160783 - - PREDICTED: endoglucanase 17 [Populus euphratica]
6 Hb_000394_120 0.0825152991 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 2-like [Populus euphratica]
7 Hb_001123_180 0.0848135508 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000160_110 0.0902157395 - - PREDICTED: uncharacterized protein LOC100253584 [Vitis vinifera]
9 Hb_113974_010 0.0912689105 - - DNA binding protein, putative [Ricinus communis]
10 Hb_004241_160 0.0927950493 - - PREDICTED: receptor-like serine/threonine-protein kinase SD1-7 [Jatropha curcas]
11 Hb_006332_030 0.0942661317 - - RecName: Full=Valine N-monooxygenase 1; AltName: Full=Cytochrome P450 79D1 [Manihot esculenta]
12 Hb_056196_020 0.0956694047 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
13 Hb_000175_160 0.0958010343 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
14 Hb_002837_120 0.0974927148 - - PREDICTED: legumin A-like [Jatropha curcas]
15 Hb_011859_010 0.1038824852 - - hypothetical protein VITISV_027923 [Vitis vinifera]
16 Hb_005914_100 0.1062204046 - - conserved hypothetical protein [Ricinus communis]
17 Hb_004097_030 0.1080702115 - - PREDICTED: uncharacterized protein LOC105634518 [Jatropha curcas]
18 Hb_002453_040 0.1088757861 - - PREDICTED: uncharacterized protein LOC105636487 [Jatropha curcas]
19 Hb_000193_170 0.1094792894 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
20 Hb_022092_100 0.1102329099 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003641_040 Hb_003641_040 Hb_000675_130 Hb_000675_130 Hb_003641_040--Hb_000675_130 Hb_001969_030 Hb_001969_030 Hb_003641_040--Hb_001969_030 Hb_008226_050 Hb_008226_050 Hb_003641_040--Hb_008226_050 Hb_000853_020 Hb_000853_020 Hb_003641_040--Hb_000853_020 Hb_000394_120 Hb_000394_120 Hb_003641_040--Hb_000394_120 Hb_001123_180 Hb_001123_180 Hb_003641_040--Hb_001123_180 Hb_000675_130--Hb_000394_120 Hb_000675_130--Hb_008226_050 Hb_002205_220 Hb_002205_220 Hb_000675_130--Hb_002205_220 Hb_000675_130--Hb_001123_180 Hb_000193_170 Hb_000193_170 Hb_000675_130--Hb_000193_170 Hb_002837_120 Hb_002837_120 Hb_001969_030--Hb_002837_120 Hb_001969_030--Hb_000853_020 Hb_000175_160 Hb_000175_160 Hb_001969_030--Hb_000175_160 Hb_022092_100 Hb_022092_100 Hb_001969_030--Hb_022092_100 Hb_056196_020 Hb_056196_020 Hb_001969_030--Hb_056196_020 Hb_008226_050--Hb_002205_220 Hb_001257_070 Hb_001257_070 Hb_008226_050--Hb_001257_070 Hb_004241_160 Hb_004241_160 Hb_008226_050--Hb_004241_160 Hb_000130_400 Hb_000130_400 Hb_008226_050--Hb_000130_400 Hb_000853_020--Hb_000175_160 Hb_000853_020--Hb_022092_100 Hb_000691_060 Hb_000691_060 Hb_000853_020--Hb_000691_060 Hb_000334_100 Hb_000334_100 Hb_000853_020--Hb_000334_100 Hb_000008_100 Hb_000008_100 Hb_000853_020--Hb_000008_100 Hb_000394_120--Hb_001123_180 Hb_000394_120--Hb_056196_020 Hb_034420_010 Hb_034420_010 Hb_000394_120--Hb_034420_010 Hb_000394_120--Hb_008226_050 Hb_001123_180--Hb_000853_020 Hb_001123_180--Hb_001969_030 Hb_001123_180--Hb_000175_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187014 1.37103 187.816 63.5087 0.505572 0.260677
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0799519 0 0.0655957 6.49324

CAGE analysis