Hb_003641_050

Information

Type -
Description -
Location Contig3641: 30235-37603
Sequence    

Annotation

kegg
ID rcu:RCOM_0710230
description 46 kDa ketoavyl-ACP synthase (EC:2.3.1.41)
nr
ID XP_012077111.1
description PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
swissprot
ID Q9C9P4
description 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic OS=Arabidopsis thaliana GN=KAS2 PE=1 SV=1
trembl
ID A0A067KQ58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07535 PE=3 SV=1
Gene Ontology
ID GO:0004315
description 3-oxoacyl-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37481: 30289-37609
cDNA
(Sanger)
(ID:Location)		 017_M08.ab1: 37272-37609 , 044_E24.ab1: 37054-37184 , 044_F24.ab1: 37054-37184

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003641_050 0.0 - - PREDICTED: 3-oxoacyl-[acyl-carrier-protein] synthase II, chloroplastic [Jatropha curcas]
2 Hb_000922_330 0.0646479477 - - PREDICTED: probable BOI-related E3 ubiquitin-protein ligase 2 [Jatropha curcas]
3 Hb_000481_040 0.0759322505 - - developmentally regulated GTP-binding protein, putative [Ricinus communis]
4 Hb_005662_030 0.0759776306 - - protein with unknown function [Ricinus communis]
5 Hb_000649_050 0.0791231114 - - PREDICTED: microtubule-associated protein 70-2-like isoform X1 [Jatropha curcas]
6 Hb_007477_080 0.0849119096 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001100_050 0.0851703156 - - PREDICTED: glycoprotein 3-alpha-L-fucosyltransferase A-like [Malus domestica]
8 Hb_009265_080 0.0857392749 - - PREDICTED: apoptosis inhibitor 5 [Jatropha curcas]
9 Hb_000028_610 0.0872240941 - - PREDICTED: uncharacterized protein LOC105644291 [Jatropha curcas]
10 Hb_000679_130 0.0887502419 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_006816_390 0.0918814306 - - protein phosphatase, putative [Ricinus communis]
12 Hb_010423_020 0.0958738598 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
13 Hb_134364_010 0.0975766859 - - PREDICTED: transcriptional adapter ADA2b isoform X1 [Jatropha curcas]
14 Hb_000025_110 0.0976892223 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
15 Hb_000034_050 0.097703131 - - PREDICTED: uncharacterized protein LOC105637912 [Jatropha curcas]
16 Hb_000184_110 0.0983317465 - - hypothetical protein F383_18769 [Gossypium arboreum]
17 Hb_002174_060 0.098789253 - - PREDICTED: pentatricopeptide repeat-containing protein At1g09900-like [Jatropha curcas]
18 Hb_000010_090 0.0994284715 - - PREDICTED: afadin- and alpha-actinin-binding protein isoform X1 [Jatropha curcas]
19 Hb_014720_160 0.0998158041 - - PREDICTED: anthranilate phosphoribosyltransferase, chloroplastic [Jatropha curcas]
20 Hb_001369_180 0.1003691918 - - PREDICTED: protein RFT1 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_003641_050 Hb_003641_050 Hb_000922_330 Hb_000922_330 Hb_003641_050--Hb_000922_330 Hb_000481_040 Hb_000481_040 Hb_003641_050--Hb_000481_040 Hb_005662_030 Hb_005662_030 Hb_003641_050--Hb_005662_030 Hb_000649_050 Hb_000649_050 Hb_003641_050--Hb_000649_050 Hb_007477_080 Hb_007477_080 Hb_003641_050--Hb_007477_080 Hb_001100_050 Hb_001100_050 Hb_003641_050--Hb_001100_050 Hb_014720_160 Hb_014720_160 Hb_000922_330--Hb_014720_160 Hb_000085_060 Hb_000085_060 Hb_000922_330--Hb_000085_060 Hb_000679_130 Hb_000679_130 Hb_000922_330--Hb_000679_130 Hb_000922_330--Hb_005662_030 Hb_002527_030 Hb_002527_030 Hb_000922_330--Hb_002527_030 Hb_009265_080 Hb_009265_080 Hb_000481_040--Hb_009265_080 Hb_002007_350 Hb_002007_350 Hb_000481_040--Hb_002007_350 Hb_008253_010 Hb_008253_010 Hb_000481_040--Hb_008253_010 Hb_000481_040--Hb_005662_030 Hb_001017_040 Hb_001017_040 Hb_000481_040--Hb_001017_040 Hb_001862_190 Hb_001862_190 Hb_005662_030--Hb_001862_190 Hb_000620_010 Hb_000620_010 Hb_005662_030--Hb_000620_010 Hb_000184_110 Hb_000184_110 Hb_005662_030--Hb_000184_110 Hb_000028_610 Hb_000028_610 Hb_005662_030--Hb_000028_610 Hb_006065_020 Hb_006065_020 Hb_005662_030--Hb_006065_020 Hb_005662_030--Hb_001017_040 Hb_000649_050--Hb_000922_330 Hb_002681_050 Hb_002681_050 Hb_000649_050--Hb_002681_050 Hb_000649_050--Hb_001100_050 Hb_003376_050 Hb_003376_050 Hb_000649_050--Hb_003376_050 Hb_000649_050--Hb_007477_080 Hb_006816_390 Hb_006816_390 Hb_007477_080--Hb_006816_390 Hb_007477_080--Hb_001100_050 Hb_007477_080--Hb_001862_190 Hb_033153_050 Hb_033153_050 Hb_007477_080--Hb_033153_050 Hb_000134_090 Hb_000134_090 Hb_007477_080--Hb_000134_090 Hb_000699_140 Hb_000699_140 Hb_007477_080--Hb_000699_140 Hb_001100_050--Hb_000699_140 Hb_001100_050--Hb_000620_010 Hb_001100_050--Hb_006816_390 Hb_000072_220 Hb_000072_220 Hb_001100_050--Hb_000072_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.6433 14.8496 27.5492 23.3124 49.6391 74.2898
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
42.628 26.6312 40.6028 18.2672 28.4934

CAGE analysis