Hb_003641_060

Information

Type -
Description -
Location Contig3641: 61262-65276
Sequence    

Annotation

kegg
ID rcu:RCOM_0710240
description hypothetical protein
nr
ID XP_012077113.1
description PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RR60
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0710240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37483: 62101-62634 , PASA_asmbl_37484: 63644-64469 , PASA_asmbl_37485: 63644-64445 , PASA_asmbl_37486: 64814-65217
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003641_060 0.0 - - PREDICTED: uncharacterized protein LOC105638019 [Jatropha curcas]
2 Hb_063716_080 0.0661515071 - - DNA-directed RNA polymerase III subunit F, putative [Ricinus communis]
3 Hb_000785_080 0.0722960788 - - PREDICTED: zinc finger CCCH domain-containing protein 13 [Jatropha curcas]
4 Hb_004881_020 0.073993281 - - PREDICTED: serine/threonine-protein kinase rio2-like [Jatropha curcas]
5 Hb_002255_030 0.0805722927 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
6 Hb_010931_040 0.0867508225 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
7 Hb_187739_020 0.0910284482 - - PREDICTED: B2 protein [Jatropha curcas]
8 Hb_004934_070 0.093035358 - - PREDICTED: U2 small nuclear ribonucleoprotein A' [Jatropha curcas]
9 Hb_002044_060 0.093099624 - - elongation factor ts, putative [Ricinus communis]
10 Hb_002960_160 0.0933767478 - - PREDICTED: vacuolar protein sorting-associated protein 35B isoform X2 [Jatropha curcas]
11 Hb_006252_040 0.0939386521 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
12 Hb_003299_070 0.0951917133 - - AMP deaminase [Theobroma cacao]
13 Hb_000083_160 0.0952878457 - - Cell division cycle protein, putative [Ricinus communis]
14 Hb_004370_030 0.0966706714 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
15 Hb_023386_040 0.0979490216 - - PREDICTED: chaperone protein dnaJ 13-like [Populus euphratica]
16 Hb_080313_010 0.0979751797 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
17 Hb_001025_110 0.0987887669 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002784_060 0.0988664855 transcription factor TF Family: bZIP PREDICTED: transcription factor TGA6 isoform X1 [Jatropha curcas]
19 Hb_008159_020 0.0993186485 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
20 Hb_000567_050 0.0997349246 - - PREDICTED: UBP1-associated protein 2C [Jatropha curcas]

Gene co-expression network

sample Hb_003641_060 Hb_003641_060 Hb_063716_080 Hb_063716_080 Hb_003641_060--Hb_063716_080 Hb_000785_080 Hb_000785_080 Hb_003641_060--Hb_000785_080 Hb_004881_020 Hb_004881_020 Hb_003641_060--Hb_004881_020 Hb_002255_030 Hb_002255_030 Hb_003641_060--Hb_002255_030 Hb_010931_040 Hb_010931_040 Hb_003641_060--Hb_010931_040 Hb_187739_020 Hb_187739_020 Hb_003641_060--Hb_187739_020 Hb_002960_160 Hb_002960_160 Hb_063716_080--Hb_002960_160 Hb_063716_080--Hb_002255_030 Hb_012180_050 Hb_012180_050 Hb_063716_080--Hb_012180_050 Hb_080313_010 Hb_080313_010 Hb_063716_080--Hb_080313_010 Hb_003935_030 Hb_003935_030 Hb_063716_080--Hb_003935_030 Hb_004934_070 Hb_004934_070 Hb_000785_080--Hb_004934_070 Hb_000083_160 Hb_000083_160 Hb_000785_080--Hb_000083_160 Hb_003010_020 Hb_003010_020 Hb_000785_080--Hb_003010_020 Hb_000038_080 Hb_000038_080 Hb_000785_080--Hb_000038_080 Hb_000785_080--Hb_004881_020 Hb_007594_130 Hb_007594_130 Hb_004881_020--Hb_007594_130 Hb_003952_070 Hb_003952_070 Hb_004881_020--Hb_003952_070 Hb_006252_040 Hb_006252_040 Hb_004881_020--Hb_006252_040 Hb_000212_240 Hb_000212_240 Hb_004881_020--Hb_000212_240 Hb_103012_010 Hb_103012_010 Hb_004881_020--Hb_103012_010 Hb_002671_100 Hb_002671_100 Hb_004881_020--Hb_002671_100 Hb_000023_330 Hb_000023_330 Hb_002255_030--Hb_000023_330 Hb_003680_150 Hb_003680_150 Hb_002255_030--Hb_003680_150 Hb_000347_180 Hb_000347_180 Hb_002255_030--Hb_000347_180 Hb_002045_240 Hb_002045_240 Hb_002255_030--Hb_002045_240 Hb_000574_540 Hb_000574_540 Hb_002255_030--Hb_000574_540 Hb_003464_020 Hb_003464_020 Hb_010931_040--Hb_003464_020 Hb_002235_160 Hb_002235_160 Hb_010931_040--Hb_002235_160 Hb_002044_060 Hb_002044_060 Hb_010931_040--Hb_002044_060 Hb_001085_320 Hb_001085_320 Hb_010931_040--Hb_001085_320 Hb_000023_190 Hb_000023_190 Hb_010931_040--Hb_000023_190 Hb_000567_050 Hb_000567_050 Hb_010931_040--Hb_000567_050 Hb_000866_030 Hb_000866_030 Hb_187739_020--Hb_000866_030 Hb_002982_040 Hb_002982_040 Hb_187739_020--Hb_002982_040 Hb_003656_140 Hb_003656_140 Hb_187739_020--Hb_003656_140 Hb_000160_220 Hb_000160_220 Hb_187739_020--Hb_000160_220 Hb_031862_180 Hb_031862_180 Hb_187739_020--Hb_031862_180 Hb_008714_020 Hb_008714_020 Hb_187739_020--Hb_008714_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.3454 6.37965 4.10105 5.35092 5.60316 12.4172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.02727 4.59394 2.45834 5.6113 3.20957

CAGE analysis