Hb_003642_010

Information

Type -
Description -
Location Contig3642: 9877-20956
Sequence    

Annotation

kegg
ID pmum:103330957
description chlorophyll(ide) b reductase NOL, chloroplastic
nr
ID XP_012070564.1
description PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q8LEU3
description Chlorophyll(ide) b reductase NOL, chloroplastic OS=Arabidopsis thaliana GN=NOL PE=1 SV=1
trembl
ID A0A067KTE6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04165 PE=3 SV=1
Gene Ontology
ID GO:0016491
description chlorophyll b reductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37489: 9860-13060 , PASA_asmbl_37490: 10068-80763 , PASA_asmbl_37492: 10068-80756
cDNA
(Sanger)
(ID:Location)		 018_B02.ab1: 9860-13058

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003642_010 0.0 - - PREDICTED: chlorophyll(ide) b reductase NOL, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_016219_030 0.110985886 - - cytochrome P450, putative [Ricinus communis]
3 Hb_000189_450 0.1138666695 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
4 Hb_004631_090 0.1191199707 - - PREDICTED: probable glucan 1,3-beta-glucosidase A [Jatropha curcas]
5 Hb_000328_050 0.1245958935 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
6 Hb_002955_020 0.1254948206 - - PREDICTED: calcium uniporter protein 6, mitochondrial-like [Jatropha curcas]
7 Hb_000107_590 0.1280127464 - - PREDICTED: tricalbin-3 [Jatropha curcas]
8 Hb_000096_190 0.1330780049 - - unknown [Lotus japonicus]
9 Hb_001789_200 0.1332544394 - - PREDICTED: sec-independent protein translocase protein TATB, chloroplastic [Jatropha curcas]
10 Hb_009767_130 0.1380331957 - - PREDICTED: preprotein translocase subunit SECE1 [Jatropha curcas]
11 Hb_042083_040 0.1420755258 - - conserved hypothetical protein [Ricinus communis]
12 Hb_174865_040 0.1457576793 - - PREDICTED: crt homolog 1 isoform X2 [Jatropha curcas]
13 Hb_008375_010 0.1494192826 - - PREDICTED: carbon catabolite repressor protein 4 homolog 4 isoform X3 [Pyrus x bretschneideri]
14 Hb_000327_110 0.1494818486 - - hypothetical protein JCGZ_06657 [Jatropha curcas]
15 Hb_000816_200 0.1494939619 - - 2-deoxyglucose-6-phosphate phosphatase, putative [Ricinus communis]
16 Hb_130589_010 0.150598437 - - PREDICTED: clustered mitochondria protein homolog [Jatropha curcas]
17 Hb_001449_070 0.1506319693 - - conserved hypothetical protein [Ricinus communis]
18 Hb_006006_060 0.1513679392 - - PREDICTED: triacylglycerol lipase 1 isoform X2 [Jatropha curcas]
19 Hb_011386_030 0.151394016 - - PREDICTED: probable protein phosphatase 2C 26 [Jatropha curcas]
20 Hb_002053_010 0.1519980951 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]

Gene co-expression network

sample Hb_003642_010 Hb_003642_010 Hb_016219_030 Hb_016219_030 Hb_003642_010--Hb_016219_030 Hb_000189_450 Hb_000189_450 Hb_003642_010--Hb_000189_450 Hb_004631_090 Hb_004631_090 Hb_003642_010--Hb_004631_090 Hb_000328_050 Hb_000328_050 Hb_003642_010--Hb_000328_050 Hb_002955_020 Hb_002955_020 Hb_003642_010--Hb_002955_020 Hb_000107_590 Hb_000107_590 Hb_003642_010--Hb_000107_590 Hb_016219_030--Hb_000189_450 Hb_000438_140 Hb_000438_140 Hb_016219_030--Hb_000438_140 Hb_002053_010 Hb_002053_010 Hb_016219_030--Hb_002053_010 Hb_001789_200 Hb_001789_200 Hb_016219_030--Hb_001789_200 Hb_000032_500 Hb_000032_500 Hb_016219_030--Hb_000032_500 Hb_001105_040 Hb_001105_040 Hb_016219_030--Hb_001105_040 Hb_001677_220 Hb_001677_220 Hb_000189_450--Hb_001677_220 Hb_000816_200 Hb_000816_200 Hb_000189_450--Hb_000816_200 Hb_003142_010 Hb_003142_010 Hb_000189_450--Hb_003142_010 Hb_001080_070 Hb_001080_070 Hb_000189_450--Hb_001080_070 Hb_000114_150 Hb_000114_150 Hb_000189_450--Hb_000114_150 Hb_012573_050 Hb_012573_050 Hb_004631_090--Hb_012573_050 Hb_004644_030 Hb_004644_030 Hb_004631_090--Hb_004644_030 Hb_048093_010 Hb_048093_010 Hb_004631_090--Hb_048093_010 Hb_007441_310 Hb_007441_310 Hb_004631_090--Hb_007441_310 Hb_156850_100 Hb_156850_100 Hb_004631_090--Hb_156850_100 Hb_042083_040 Hb_042083_040 Hb_004631_090--Hb_042083_040 Hb_000014_040 Hb_000014_040 Hb_000328_050--Hb_000014_040 Hb_001584_340 Hb_001584_340 Hb_000328_050--Hb_001584_340 Hb_006006_060 Hb_006006_060 Hb_000328_050--Hb_006006_060 Hb_016219_010 Hb_016219_010 Hb_000328_050--Hb_016219_010 Hb_003777_250 Hb_003777_250 Hb_000328_050--Hb_003777_250 Hb_000920_310 Hb_000920_310 Hb_002955_020--Hb_000920_310 Hb_000665_180 Hb_000665_180 Hb_002955_020--Hb_000665_180 Hb_000860_060 Hb_000860_060 Hb_002955_020--Hb_000860_060 Hb_000049_160 Hb_000049_160 Hb_002955_020--Hb_000049_160 Hb_001486_040 Hb_001486_040 Hb_002955_020--Hb_001486_040 Hb_000638_070 Hb_000638_070 Hb_002955_020--Hb_000638_070 Hb_000107_590--Hb_000114_150 Hb_000107_590--Hb_000816_200 Hb_001628_120 Hb_001628_120 Hb_000107_590--Hb_001628_120 Hb_000107_590--Hb_007441_310 Hb_002305_010 Hb_002305_010 Hb_000107_590--Hb_002305_010 Hb_000866_050 Hb_000866_050 Hb_000107_590--Hb_000866_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.58782 1.56665 6.93113 12.3489 1.4499 6.42433
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.85182 5.26598 2.10815 3.83411 18.4292

CAGE analysis