Hb_003642_020

Information

Type -
Description -
Location Contig3642: 78395-80406
Sequence    

Annotation

kegg
ID mdm:103418488
description chlorophyll(ide) b reductase NOL, chloroplastic-like
nr
ID AEO19897.1
description chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
swissprot
ID -
description -
trembl
ID G3K715
description Chlorophyll(Ide) b reductase (Fragment) OS=Pyrus x bretschneideri GN=NOL PE=2 SV=1
Gene Ontology
ID GO:0009535
description chlorophyll b reductase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37490: 10068-80763 , PASA_asmbl_37492: 10068-80756
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003642_020 0.0 - - chlorophyll(ide) b reductase, partial [Pyrus x bretschneideri]
2 Hb_002079_040 0.1809332899 - - hypothetical protein VITISV_018542 [Vitis vinifera]
3 Hb_008206_090 0.190217729 - - PREDICTED: uncharacterized protein LOC100811033 [Glycine max]
4 Hb_048702_010 0.1910528544 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
5 Hb_002611_030 0.1967093566 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
6 Hb_094437_040 0.2101798632 - - ankyrin repeat family protein, partial [Manihot esculenta]
7 Hb_001059_140 0.2103398588 - - hypothetical protein POPTR_0004s03390g [Populus trichocarpa]
8 Hb_010984_040 0.2139718793 - - hypothetical protein M569_17286, partial [Genlisea aurea]
9 Hb_006634_110 0.2200143316 - - BnaC04g40780D [Brassica napus]
10 Hb_000034_090 0.2216177829 transcription factor TF Family: M-type MPF2-like, partial [Dunalia fasciculata]
11 Hb_002078_500 0.22201164 - - conserved hypothetical protein [Ricinus communis]
12 Hb_017014_020 0.2226305461 - - -
13 Hb_004525_050 0.2276430004 - - similar to Drosophila melanogaster CG10960, partial [Drosophila yakuba]
14 Hb_004079_050 0.2285718417 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
15 Hb_005271_230 0.2305781769 - - PREDICTED: uncharacterized protein LOC105645849 isoform X4 [Jatropha curcas]
16 Hb_006162_020 0.233106242 - - -
17 Hb_047691_010 0.2338282351 - - Uncharacterized protein F383_01974 [Gossypium arboreum]
18 Hb_009083_030 0.236658728 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
19 Hb_003030_040 0.2377751728 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
20 Hb_003397_020 0.2392032228 - - -

Gene co-expression network

sample Hb_003642_020 Hb_003642_020 Hb_002079_040 Hb_002079_040 Hb_003642_020--Hb_002079_040 Hb_008206_090 Hb_008206_090 Hb_003642_020--Hb_008206_090 Hb_048702_010 Hb_048702_010 Hb_003642_020--Hb_048702_010 Hb_002611_030 Hb_002611_030 Hb_003642_020--Hb_002611_030 Hb_094437_040 Hb_094437_040 Hb_003642_020--Hb_094437_040 Hb_001059_140 Hb_001059_140 Hb_003642_020--Hb_001059_140 Hb_002078_500 Hb_002078_500 Hb_002079_040--Hb_002078_500 Hb_000034_090 Hb_000034_090 Hb_002079_040--Hb_000034_090 Hb_003030_040 Hb_003030_040 Hb_002079_040--Hb_003030_040 Hb_013394_100 Hb_013394_100 Hb_002079_040--Hb_013394_100 Hb_012675_080 Hb_012675_080 Hb_002079_040--Hb_012675_080 Hb_005107_020 Hb_005107_020 Hb_002079_040--Hb_005107_020 Hb_033683_020 Hb_033683_020 Hb_008206_090--Hb_033683_020 Hb_005271_230 Hb_005271_230 Hb_008206_090--Hb_005271_230 Hb_003397_020 Hb_003397_020 Hb_008206_090--Hb_003397_020 Hb_006910_050 Hb_006910_050 Hb_008206_090--Hb_006910_050 Hb_000049_130 Hb_000049_130 Hb_008206_090--Hb_000049_130 Hb_006634_110 Hb_006634_110 Hb_048702_010--Hb_006634_110 Hb_100137_010 Hb_100137_010 Hb_048702_010--Hb_100137_010 Hb_048702_010--Hb_002611_030 Hb_017014_010 Hb_017014_010 Hb_048702_010--Hb_017014_010 Hb_122636_010 Hb_122636_010 Hb_048702_010--Hb_122636_010 Hb_010577_010 Hb_010577_010 Hb_048702_010--Hb_010577_010 Hb_002611_030--Hb_017014_010 Hb_002611_030--Hb_100137_010 Hb_004466_060 Hb_004466_060 Hb_002611_030--Hb_004466_060 Hb_009083_030 Hb_009083_030 Hb_002611_030--Hb_009083_030 Hb_010003_010 Hb_010003_010 Hb_002611_030--Hb_010003_010 Hb_094437_040--Hb_002611_030 Hb_041025_010 Hb_041025_010 Hb_094437_040--Hb_041025_010 Hb_183522_010 Hb_183522_010 Hb_094437_040--Hb_183522_010 Hb_114079_010 Hb_114079_010 Hb_094437_040--Hb_114079_010 Hb_006422_030 Hb_006422_030 Hb_094437_040--Hb_006422_030 Hb_047691_010 Hb_047691_010 Hb_001059_140--Hb_047691_010 Hb_001059_140--Hb_048702_010 Hb_017014_020 Hb_017014_020 Hb_001059_140--Hb_017014_020 Hb_121694_010 Hb_121694_010 Hb_001059_140--Hb_121694_010 Hb_099990_020 Hb_099990_020 Hb_001059_140--Hb_099990_020 Hb_184541_010 Hb_184541_010 Hb_001059_140--Hb_184541_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4327 1.89744 9.71478 103.557 2.1447 59.8207
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.49575 9.68562 3.09766 6.58812 35.1835

CAGE analysis