Hb_003642_050

Information

Type -
Description -
Location Contig3642: 123920-124792
Sequence    

Annotation

kegg
ID cic:CICLE_v10020719mg
description hypothetical protein
nr
ID KDO47278.1
description hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID A0A067DWT3
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g048193mg PE=4 SV=1
Gene Ontology
ID GO:0005739
description protein root primordium defective 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003642_050 0.0 - - hypothetical protein CISIN_1g048193mg, partial [Citrus sinensis]
2 Hb_000125_030 0.0923300345 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
3 Hb_003581_260 0.1204076971 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
4 Hb_003504_020 0.1212433406 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
5 Hb_001159_080 0.122378798 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
6 Hb_012799_100 0.1266066927 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
7 Hb_001096_110 0.1267487227 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
8 Hb_000141_020 0.1278971773 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
9 Hb_010407_180 0.1311900195 - - PREDICTED: phosphoenolpyruvate carboxylase kinase 1-like [Jatropha curcas]
10 Hb_007429_030 0.1327635923 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
11 Hb_019654_090 0.1356059227 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
12 Hb_001846_070 0.135695071 - - PREDICTED: fructokinase-1 [Jatropha curcas]
13 Hb_020301_040 0.1372460192 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
14 Hb_004414_050 0.1380230665 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
15 Hb_000264_020 0.1418528884 transcription factor TF Family: C2C2-Dof zinc finger protein, putative [Ricinus communis]
16 Hb_021409_160 0.1426398222 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
17 Hb_000406_120 0.1431801381 - - acyl carrier protein 1, chloroplastic-like [Jatropha curcas]
18 Hb_005928_100 0.1439679244 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
19 Hb_000196_080 0.1443826227 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
20 Hb_003579_030 0.1459833042 - - phosphatase 2C family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_003642_050 Hb_003642_050 Hb_000125_030 Hb_000125_030 Hb_003642_050--Hb_000125_030 Hb_003581_260 Hb_003581_260 Hb_003642_050--Hb_003581_260 Hb_003504_020 Hb_003504_020 Hb_003642_050--Hb_003504_020 Hb_001159_080 Hb_001159_080 Hb_003642_050--Hb_001159_080 Hb_012799_100 Hb_012799_100 Hb_003642_050--Hb_012799_100 Hb_001096_110 Hb_001096_110 Hb_003642_050--Hb_001096_110 Hb_000406_120 Hb_000406_120 Hb_000125_030--Hb_000406_120 Hb_002056_060 Hb_002056_060 Hb_000125_030--Hb_002056_060 Hb_000125_030--Hb_003504_020 Hb_000141_020 Hb_000141_020 Hb_000125_030--Hb_000141_020 Hb_010407_180 Hb_010407_180 Hb_000125_030--Hb_010407_180 Hb_002876_120 Hb_002876_120 Hb_003581_260--Hb_002876_120 Hb_003581_260--Hb_001159_080 Hb_007594_120 Hb_007594_120 Hb_003581_260--Hb_007594_120 Hb_000061_300 Hb_000061_300 Hb_003581_260--Hb_000061_300 Hb_002182_030 Hb_002182_030 Hb_003581_260--Hb_002182_030 Hb_001135_210 Hb_001135_210 Hb_003581_260--Hb_001135_210 Hb_007382_150 Hb_007382_150 Hb_003504_020--Hb_007382_150 Hb_007429_030 Hb_007429_030 Hb_003504_020--Hb_007429_030 Hb_003504_020--Hb_000141_020 Hb_024714_060 Hb_024714_060 Hb_003504_020--Hb_024714_060 Hb_003579_030 Hb_003579_030 Hb_003504_020--Hb_003579_030 Hb_001159_080--Hb_001096_110 Hb_000327_220 Hb_000327_220 Hb_001159_080--Hb_000327_220 Hb_001159_080--Hb_000141_020 Hb_001159_080--Hb_000125_030 Hb_000099_130 Hb_000099_130 Hb_001159_080--Hb_000099_130 Hb_002205_130 Hb_002205_130 Hb_012799_100--Hb_002205_130 Hb_000019_060 Hb_000019_060 Hb_012799_100--Hb_000019_060 Hb_011030_020 Hb_011030_020 Hb_012799_100--Hb_011030_020 Hb_001189_050 Hb_001189_050 Hb_012799_100--Hb_001189_050 Hb_168319_030 Hb_168319_030 Hb_012799_100--Hb_168319_030 Hb_005569_020 Hb_005569_020 Hb_001096_110--Hb_005569_020 Hb_001096_110--Hb_003581_260 Hb_001096_110--Hb_010407_180 Hb_001279_340 Hb_001279_340 Hb_001096_110--Hb_001279_340 Hb_000108_070 Hb_000108_070 Hb_001096_110--Hb_000108_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.585024 0.23166 0.201673 0.187276 0.111756 0.181601
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.685394 1.1449 1.67432 0.219623 0.265008

CAGE analysis