Hb_003642_060

Information

Type -
Description -
Location Contig3642: 125246-129805
Sequence    

Annotation

kegg
ID rcu:RCOM_1189860
description hypothetical protein
nr
ID XP_002516324.1
description hypothetical protein RCOM_1189860 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RRF5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1189860 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37493: 125266-128421 , PASA_asmbl_37494: 125250-126866 , PASA_asmbl_37495: 125266-126000 , PASA_asmbl_37496: 127502-128329
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003642_060 0.0 - - hypothetical protein RCOM_1189860 [Ricinus communis]
2 Hb_001214_130 0.0561299954 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
3 Hb_028639_060 0.0580535647 - - transporter, putative [Ricinus communis]
4 Hb_168707_030 0.0581779679 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
5 Hb_000905_190 0.0585249218 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
6 Hb_000089_220 0.0609780634 - - PREDICTED: protein FAM133-like [Populus euphratica]
7 Hb_004195_160 0.0646437894 - - PREDICTED: uncharacterized protein LOC105634617 [Jatropha curcas]
8 Hb_000943_070 0.0652019857 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
9 Hb_001030_120 0.0661550726 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
10 Hb_000162_090 0.0670997843 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
11 Hb_000057_040 0.0687280464 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_005306_110 0.0705538248 - - casein kinase, putative [Ricinus communis]
13 Hb_000030_010 0.0708767668 - - PREDICTED: uncharacterized protein LOC105632627 [Jatropha curcas]
14 Hb_003406_010 0.0709573132 - - putative ATP-dependent RNA helicase DHX36 [Morus notabilis]
15 Hb_001511_020 0.0718778311 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
16 Hb_000120_950 0.0739494361 - - PREDICTED: protein GRIP [Jatropha curcas]
17 Hb_010608_010 0.0746749999 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
18 Hb_000421_260 0.0749513862 - - PREDICTED: carbamoyl-phosphate synthase large chain, chloroplastic [Jatropha curcas]
19 Hb_148912_010 0.075641336 - - conserved hypothetical protein [Ricinus communis]
20 Hb_009111_050 0.0766489656 transcription factor TF Family: Jumonji PREDICTED: pentatricopeptide repeat-containing protein At5g06540 [Populus euphratica]

Gene co-expression network

sample Hb_003642_060 Hb_003642_060 Hb_001214_130 Hb_001214_130 Hb_003642_060--Hb_001214_130 Hb_028639_060 Hb_028639_060 Hb_003642_060--Hb_028639_060 Hb_168707_030 Hb_168707_030 Hb_003642_060--Hb_168707_030 Hb_000905_190 Hb_000905_190 Hb_003642_060--Hb_000905_190 Hb_000089_220 Hb_000089_220 Hb_003642_060--Hb_000089_220 Hb_004195_160 Hb_004195_160 Hb_003642_060--Hb_004195_160 Hb_001214_130--Hb_028639_060 Hb_001214_130--Hb_000905_190 Hb_003120_060 Hb_003120_060 Hb_001214_130--Hb_003120_060 Hb_000943_070 Hb_000943_070 Hb_001214_130--Hb_000943_070 Hb_000803_150 Hb_000803_150 Hb_001214_130--Hb_000803_150 Hb_000236_370 Hb_000236_370 Hb_028639_060--Hb_000236_370 Hb_000012_090 Hb_000012_090 Hb_028639_060--Hb_000012_090 Hb_000803_300 Hb_000803_300 Hb_028639_060--Hb_000803_300 Hb_001030_120 Hb_001030_120 Hb_028639_060--Hb_001030_120 Hb_000057_040 Hb_000057_040 Hb_168707_030--Hb_000057_040 Hb_001006_170 Hb_001006_170 Hb_168707_030--Hb_001006_170 Hb_001439_150 Hb_001439_150 Hb_168707_030--Hb_001439_150 Hb_000000_080 Hb_000000_080 Hb_168707_030--Hb_000000_080 Hb_168707_030--Hb_004195_160 Hb_002997_170 Hb_002997_170 Hb_000905_190--Hb_002997_170 Hb_005928_060 Hb_005928_060 Hb_000905_190--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000905_190--Hb_003453_020 Hb_001741_140 Hb_001741_140 Hb_000905_190--Hb_001741_140 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_006185_050 Hb_006185_050 Hb_000089_220--Hb_006185_050 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_007426_230 Hb_007426_230 Hb_004195_160--Hb_007426_230 Hb_000398_180 Hb_000398_180 Hb_004195_160--Hb_000398_180 Hb_004195_160--Hb_001030_120 Hb_001377_290 Hb_001377_290 Hb_004195_160--Hb_001377_290 Hb_006332_020 Hb_006332_020 Hb_004195_160--Hb_006332_020 Hb_002609_110 Hb_002609_110 Hb_004195_160--Hb_002609_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.1559 5.4687 4.78769 3.36172 13.6276 16.6267
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3638 11.2996 10.9399 4.68688 2.96924

CAGE analysis