Hb_003643_030

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig3643: 24023-24268
Sequence    

Annotation

kegg
ID cic:CICLE_v100065071m
description hypothetical protein
nr
ID XP_011038340.1
description PREDICTED: disease resistance protein RGA2-like [Populus euphratica]
swissprot
ID Q6L3Y2
description Putative late blight resistance protein homolog R1B-11 OS=Solanum demissum GN=R1B-11 PE=5 SV=1
trembl
ID V4S2T1
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100065071mg PE=4 SV=1
Gene Ontology
ID GO:0043531
description disease resistance protein rga1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003643_030 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Populus euphratica]
2 Hb_001754_160 0.1338592109 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
3 Hb_003266_070 0.1449897091 - - -
4 Hb_001195_210 0.2305239386 - - -
5 Hb_000116_200 0.235797966 transcription factor TF Family: HMG hypothetical protein POPTR_0005s10440g [Populus trichocarpa]
6 Hb_001143_150 0.2443529392 - - PREDICTED: mitochondrial protein import protein MAS5-like [Populus euphratica]
7 Hb_160246_010 0.2459764599 - - calcium ion binding protein, putative [Ricinus communis]
8 Hb_004242_210 0.2473098082 - - PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
9 Hb_000896_070 0.2618493746 - - ammonium transporter, putative [Ricinus communis]
10 Hb_011099_010 0.2652973898 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
11 Hb_000127_050 0.2718162172 - - -
12 Hb_000743_070 0.2743781572 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_21060 [Jatropha curcas]
13 Hb_000705_110 0.2796259987 - - hypothetical protein POPTR_0005s09220g [Populus trichocarpa]
14 Hb_000046_550 0.2796545982 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
15 Hb_000112_100 0.280139962 - - glutamate receptor 2 plant, putative [Ricinus communis]
16 Hb_003858_050 0.2807194988 - - hypothetical protein PRUPE_ppa021882mg [Prunus persica]
17 Hb_160814_010 0.2810726963 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
18 Hb_005305_170 0.282188581 - - PREDICTED: probable beta-1,3-galactosyltransferase 8 [Jatropha curcas]
19 Hb_020112_010 0.2834542033 - - acyltransferase, putative [Ricinus communis]
20 Hb_000087_090 0.2840958479 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL61 [Jatropha curcas]

Gene co-expression network

sample Hb_003643_030 Hb_003643_030 Hb_001754_160 Hb_001754_160 Hb_003643_030--Hb_001754_160 Hb_003266_070 Hb_003266_070 Hb_003643_030--Hb_003266_070 Hb_001195_210 Hb_001195_210 Hb_003643_030--Hb_001195_210 Hb_000116_200 Hb_000116_200 Hb_003643_030--Hb_000116_200 Hb_001143_150 Hb_001143_150 Hb_003643_030--Hb_001143_150 Hb_160246_010 Hb_160246_010 Hb_003643_030--Hb_160246_010 Hb_000896_070 Hb_000896_070 Hb_001754_160--Hb_000896_070 Hb_001754_160--Hb_003266_070 Hb_001754_160--Hb_000116_200 Hb_011099_010 Hb_011099_010 Hb_001754_160--Hb_011099_010 Hb_001754_160--Hb_001195_210 Hb_000087_090 Hb_000087_090 Hb_003266_070--Hb_000087_090 Hb_003266_070--Hb_001143_150 Hb_003266_070--Hb_011099_010 Hb_003266_070--Hb_160246_010 Hb_005672_030 Hb_005672_030 Hb_001195_210--Hb_005672_030 Hb_015934_100 Hb_015934_100 Hb_001195_210--Hb_015934_100 Hb_000853_010 Hb_000853_010 Hb_001195_210--Hb_000853_010 Hb_000007_070 Hb_000007_070 Hb_001195_210--Hb_000007_070 Hb_146901_020 Hb_146901_020 Hb_001195_210--Hb_146901_020 Hb_001416_170 Hb_001416_170 Hb_001195_210--Hb_001416_170 Hb_000116_200--Hb_001195_210 Hb_003376_370 Hb_003376_370 Hb_000116_200--Hb_003376_370 Hb_154600_010 Hb_154600_010 Hb_000116_200--Hb_154600_010 Hb_000031_330 Hb_000031_330 Hb_000116_200--Hb_000031_330 Hb_001143_150--Hb_160246_010 Hb_000175_150 Hb_000175_150 Hb_001143_150--Hb_000175_150 Hb_034904_010 Hb_034904_010 Hb_001143_150--Hb_034904_010 Hb_000740_020 Hb_000740_020 Hb_001143_150--Hb_000740_020 Hb_160246_010--Hb_000175_150 Hb_000112_100 Hb_000112_100 Hb_160246_010--Hb_000112_100 Hb_006655_040 Hb_006655_040 Hb_160246_010--Hb_006655_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.645528 1.59053 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.523758 0 0.984064 0

CAGE analysis