Hb_003643_050

Information

Type -
Description -
Location Contig3643: 65811-68332
Sequence    

Annotation

kegg
ID egr:104442990
description probable LRR receptor-like serine/threonine-protein kinase At3g47570
nr
ID XP_011462111.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
swissprot
ID C0LGI5
description Probable LRR receptor-like serine/threonine-protein kinase At1g69990 OS=Arabidopsis thaliana GN=At1g69990 PE=2 SV=1
trembl
ID A0A0D2TM75
description Gossypium raimondii chromosome 9, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_009G092700 PE=4 SV=1
Gene Ontology
ID GO:0016301
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003643_050 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Fragaria vesca subsp. vesca]
2 Hb_001606_010 0.0974558104 - - kinase, putative [Ricinus communis]
3 Hb_001926_070 0.0987728119 - - hypothetical protein JCGZ_21510 [Jatropha curcas]
4 Hb_000486_020 0.1018937117 - - PREDICTED: L-type lectin-domain containing receptor kinase VIII.2 [Jatropha curcas]
5 Hb_000890_170 0.1085977385 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
6 Hb_001352_030 0.1210657396 - - PREDICTED: uncharacterized protein LOC105636310 [Jatropha curcas]
7 Hb_010534_040 0.1216240119 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
8 Hb_001301_260 0.1229992967 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
9 Hb_006618_110 0.123530228 - - -
10 Hb_032731_010 0.1244299175 - - RING-H2 finger protein ATL5M precursor, putative [Ricinus communis]
11 Hb_111997_010 0.1269390076 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
12 Hb_000265_170 0.1271652851 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like isoform X1 [Populus euphratica]
13 Hb_000007_330 0.1277740819 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
14 Hb_010584_020 0.1279237841 - - PREDICTED: probable polygalacturonase [Jatropha curcas]
15 Hb_001677_170 0.1282045792 - - hypothetical protein M569_03661, partial [Genlisea aurea]
16 Hb_010136_010 0.1286902945 - - Putative receptor-like protein kinase [Glycine soja]
17 Hb_000236_130 0.1310960559 - - PREDICTED: protein ECERIFERUM 26 [Jatropha curcas]
18 Hb_001148_110 0.1324179121 - - -
19 Hb_000302_360 0.1334317419 - - beta-carotene hydroxylase, putative [Ricinus communis]
20 Hb_003531_050 0.133881195 - - PREDICTED: pyridoxal reductase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_003643_050 Hb_003643_050 Hb_001606_010 Hb_001606_010 Hb_003643_050--Hb_001606_010 Hb_001926_070 Hb_001926_070 Hb_003643_050--Hb_001926_070 Hb_000486_020 Hb_000486_020 Hb_003643_050--Hb_000486_020 Hb_000890_170 Hb_000890_170 Hb_003643_050--Hb_000890_170 Hb_001352_030 Hb_001352_030 Hb_003643_050--Hb_001352_030 Hb_010534_040 Hb_010534_040 Hb_003643_050--Hb_010534_040 Hb_001606_010--Hb_001926_070 Hb_001606_010--Hb_000890_170 Hb_001606_010--Hb_001352_030 Hb_001606_010--Hb_000486_020 Hb_032731_010 Hb_032731_010 Hb_001606_010--Hb_032731_010 Hb_003531_050 Hb_003531_050 Hb_001606_010--Hb_003531_050 Hb_000007_330 Hb_000007_330 Hb_001926_070--Hb_000007_330 Hb_001926_070--Hb_032731_010 Hb_001677_170 Hb_001677_170 Hb_001926_070--Hb_001677_170 Hb_001926_070--Hb_000890_170 Hb_010136_010 Hb_010136_010 Hb_001926_070--Hb_010136_010 Hb_006618_110 Hb_006618_110 Hb_000486_020--Hb_006618_110 Hb_000486_020--Hb_010534_040 Hb_010584_020 Hb_010584_020 Hb_000486_020--Hb_010584_020 Hb_000486_020--Hb_010136_010 Hb_000486_020--Hb_001926_070 Hb_000236_130 Hb_000236_130 Hb_000890_170--Hb_000236_130 Hb_000313_250 Hb_000313_250 Hb_000890_170--Hb_000313_250 Hb_000890_170--Hb_000007_330 Hb_000294_020 Hb_000294_020 Hb_000890_170--Hb_000294_020 Hb_001352_030--Hb_003531_050 Hb_000265_170 Hb_000265_170 Hb_001352_030--Hb_000265_170 Hb_001352_030--Hb_010534_040 Hb_005486_020 Hb_005486_020 Hb_001352_030--Hb_005486_020 Hb_002890_160 Hb_002890_160 Hb_001352_030--Hb_002890_160 Hb_000302_360 Hb_000302_360 Hb_010534_040--Hb_000302_360 Hb_010534_040--Hb_001606_010 Hb_000645_260 Hb_000645_260 Hb_010534_040--Hb_000645_260 Hb_010534_040--Hb_002890_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0618854 0.230723 0.0967889 0.00947939 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0144115 0.153002

CAGE analysis