Hb_003645_040

Information

Type transcription factor
Description TF Family: MYB
Location Contig3645: 44971-46894
Sequence    

Annotation

kegg
ID pop:POPTR_0003s13190g
description POPTRDRAFT_646666; hypothetical protein
nr
ID XP_002304517.1
description hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
swissprot
ID Q8LPH6
description Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1
trembl
ID B9GWV1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s13190g PE=4 SV=1
Gene Ontology
ID GO:0005634
description r2r3-myb transcription

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37501: 45012-46480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003645_040 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
2 Hb_001307_180 0.0479213944 - - PREDICTED: cellulose synthase A catalytic subunit 4 [UDP-forming] isoform X1 [Jatropha curcas]
3 Hb_002085_060 0.0514551922 - - conserved hypothetical protein [Ricinus communis]
4 Hb_012633_020 0.0520008592 - - laccase, putative [Ricinus communis]
5 Hb_011912_010 0.0534484743 - - Aspartic proteinase nepenthesin-1 precursor, putative [Ricinus communis]
6 Hb_070771_010 0.0542782 - - PREDICTED: uncharacterized membrane protein At1g06890 [Jatropha curcas]
7 Hb_064047_020 0.0659301297 transcription factor TF Family: MYB hypothetical protein POPTR_0003s13190g [Populus trichocarpa]
8 Hb_000339_060 0.0737586376 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
9 Hb_002660_180 0.0756036927 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000684_190 0.0764909403 - - beta-1,3-glucuronyltransferase, putative [Ricinus communis]
11 Hb_000413_030 0.0813809224 - - PREDICTED: NAD(P)H dehydrogenase (quinone) FQR1-like [Jatropha curcas]
12 Hb_002750_030 0.0819281576 - - PREDICTED: protein IRX15-LIKE-like [Populus euphratica]
13 Hb_006065_030 0.0820498581 - - PREDICTED: filament-like plant protein 7 isoform X1 [Jatropha curcas]
14 Hb_003638_020 0.0821869366 - - PREDICTED: uncharacterized protein LOC105645807 [Jatropha curcas]
15 Hb_001935_200 0.0848404018 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
16 Hb_000836_640 0.0876485461 - - PREDICTED: uncharacterized protein LOC105644242 [Jatropha curcas]
17 Hb_000696_130 0.0886109371 - - nucleic acid binding protein, putative [Ricinus communis]
18 Hb_000422_090 0.0887725651 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003788_030 0.0901050091 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
20 Hb_000964_080 0.0940070407 transcription factor TF Family: MYB PREDICTED: transcription factor MYB86 [Jatropha curcas]

Gene co-expression network

sample Hb_003645_040 Hb_003645_040 Hb_001307_180 Hb_001307_180 Hb_003645_040--Hb_001307_180 Hb_002085_060 Hb_002085_060 Hb_003645_040--Hb_002085_060 Hb_012633_020 Hb_012633_020 Hb_003645_040--Hb_012633_020 Hb_011912_010 Hb_011912_010 Hb_003645_040--Hb_011912_010 Hb_070771_010 Hb_070771_010 Hb_003645_040--Hb_070771_010 Hb_064047_020 Hb_064047_020 Hb_003645_040--Hb_064047_020 Hb_001307_180--Hb_011912_010 Hb_001307_180--Hb_012633_020 Hb_001307_180--Hb_070771_010 Hb_002660_180 Hb_002660_180 Hb_001307_180--Hb_002660_180 Hb_000836_640 Hb_000836_640 Hb_001307_180--Hb_000836_640 Hb_000339_060 Hb_000339_060 Hb_002085_060--Hb_000339_060 Hb_003638_020 Hb_003638_020 Hb_002085_060--Hb_003638_020 Hb_002085_060--Hb_070771_010 Hb_002085_060--Hb_064047_020 Hb_002499_030 Hb_002499_030 Hb_002085_060--Hb_002499_030 Hb_012633_020--Hb_070771_010 Hb_006065_030 Hb_006065_030 Hb_012633_020--Hb_006065_030 Hb_012633_020--Hb_011912_010 Hb_042083_010 Hb_042083_010 Hb_012633_020--Hb_042083_010 Hb_000413_030 Hb_000413_030 Hb_011912_010--Hb_000413_030 Hb_011912_010--Hb_070771_010 Hb_000037_150 Hb_000037_150 Hb_011912_010--Hb_000037_150 Hb_011912_010--Hb_064047_020 Hb_070771_010--Hb_000339_060 Hb_070771_010--Hb_003638_020 Hb_064047_020--Hb_000413_030 Hb_002750_030 Hb_002750_030 Hb_064047_020--Hb_002750_030 Hb_064047_020--Hb_070771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0361316 1.75581 0.856011 37.9689 0.120857 0.0380357
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.143087 14.903

CAGE analysis