Hb_003645_060

Information

Type -
Description -
Location Contig3645: 95585-104927
Sequence    

Annotation

kegg
ID rcu:RCOM_1688340
description monodehydroascorbate reductase, putative (EC:4.2.99.18)
nr
ID XP_012086827.1
description PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
swissprot
ID P92947
description Monodehydroascorbate reductase, chloroplastic OS=Arabidopsis thaliana GN=At1g63940 PE=2 SV=3
trembl
ID A0A067JN22
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20542 PE=4 SV=1
Gene Ontology
ID GO:0005739
description monodehydroascorbate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37502: 95648-104955 , PASA_asmbl_37503: 95951-96065 , PASA_asmbl_37504: 104259-104955
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003645_060 0.0 - - PREDICTED: monodehydroascorbate reductase, chloroplastic [Jatropha curcas]
2 Hb_000563_130 0.0574514877 - - PREDICTED: WD repeat-containing protein 43 [Jatropha curcas]
3 Hb_004267_040 0.0613298974 - - PREDICTED: transcriptional adapter ADA2a [Jatropha curcas]
4 Hb_001655_030 0.0616722999 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
5 Hb_000603_030 0.0621072596 - - Ribonuclease III, putative [Ricinus communis]
6 Hb_010174_040 0.0627837018 - - PREDICTED: T-complex protein 1 subunit epsilon [Jatropha curcas]
7 Hb_000035_170 0.0658903422 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 2-like [Jatropha curcas]
8 Hb_003436_020 0.0664883256 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
9 Hb_000120_280 0.0746990166 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
10 Hb_012053_080 0.075269313 - - AP-2 complex subunit alpha, putative [Ricinus communis]
11 Hb_001062_010 0.0757100829 - - PREDICTED: CWF19-like protein 2 [Jatropha curcas]
12 Hb_028872_070 0.0763275885 desease resistance Gene Name: DEAD PREDICTED: putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP1 isoform X1 [Jatropha curcas]
13 Hb_001814_030 0.0767393926 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
14 Hb_000395_070 0.0771237612 - - PREDICTED: serine/threonine-protein kinase BLUS1 isoform X2 [Jatropha curcas]
15 Hb_025477_040 0.0790184125 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
16 Hb_001221_080 0.079534624 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
17 Hb_133702_030 0.0795932301 - - PREDICTED: uric acid degradation bifunctional protein TTL isoform X1 [Jatropha curcas]
18 Hb_000398_080 0.0800233894 - - tip120, putative [Ricinus communis]
19 Hb_011231_020 0.0802579173 - - PREDICTED: proline-, glutamic acid- and leucine-rich protein 1 isoform X2 [Jatropha curcas]
20 Hb_001379_110 0.0819998363 - - PREDICTED: sec1 family domain-containing protein MIP3 [Jatropha curcas]

Gene co-expression network

sample Hb_003645_060 Hb_003645_060 Hb_000563_130 Hb_000563_130 Hb_003645_060--Hb_000563_130 Hb_004267_040 Hb_004267_040 Hb_003645_060--Hb_004267_040 Hb_001655_030 Hb_001655_030 Hb_003645_060--Hb_001655_030 Hb_000603_030 Hb_000603_030 Hb_003645_060--Hb_000603_030 Hb_010174_040 Hb_010174_040 Hb_003645_060--Hb_010174_040 Hb_000035_170 Hb_000035_170 Hb_003645_060--Hb_000035_170 Hb_000563_130--Hb_004267_040 Hb_000563_130--Hb_000603_030 Hb_000398_080 Hb_000398_080 Hb_000563_130--Hb_000398_080 Hb_000011_100 Hb_000011_100 Hb_000563_130--Hb_000011_100 Hb_000836_410 Hb_000836_410 Hb_000563_130--Hb_000836_410 Hb_004267_040--Hb_000011_100 Hb_000120_280 Hb_000120_280 Hb_004267_040--Hb_000120_280 Hb_005588_090 Hb_005588_090 Hb_004267_040--Hb_005588_090 Hb_004267_040--Hb_000398_080 Hb_004267_040--Hb_000603_030 Hb_006501_090 Hb_006501_090 Hb_001655_030--Hb_006501_090 Hb_011231_020 Hb_011231_020 Hb_001655_030--Hb_011231_020 Hb_007426_110 Hb_007426_110 Hb_001655_030--Hb_007426_110 Hb_001814_030 Hb_001814_030 Hb_001655_030--Hb_001814_030 Hb_000890_060 Hb_000890_060 Hb_001655_030--Hb_000890_060 Hb_000603_030--Hb_000398_080 Hb_028872_070 Hb_028872_070 Hb_000603_030--Hb_028872_070 Hb_007657_020 Hb_007657_020 Hb_000603_030--Hb_007657_020 Hb_002681_090 Hb_002681_090 Hb_000603_030--Hb_002681_090 Hb_000592_030 Hb_000592_030 Hb_010174_040--Hb_000592_030 Hb_000617_180 Hb_000617_180 Hb_010174_040--Hb_000617_180 Hb_002909_140 Hb_002909_140 Hb_010174_040--Hb_002909_140 Hb_010174_040--Hb_001655_030 Hb_143629_110 Hb_143629_110 Hb_010174_040--Hb_143629_110 Hb_000035_170--Hb_006501_090 Hb_012053_080 Hb_012053_080 Hb_000035_170--Hb_012053_080 Hb_000082_070 Hb_000082_070 Hb_000035_170--Hb_000082_070 Hb_000035_170--Hb_000563_130 Hb_000035_170--Hb_001655_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.73925 6.9402 8.70687 6.96911 10.6024 8.94171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.55154 4.13637 6.92564 11.791 8.47487

CAGE analysis