Hb_003647_010

Information

Type -
Description -
Location Contig3647: 8007-10481
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09350g
description POPTRDRAFT_560836; hypothetical protein
nr
ID KDP24533.1
description hypothetical protein JCGZ_25097 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JNX8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25097 PE=4 SV=1
Gene Ontology
ID GO:0006914
description proteasome inhibitor-related

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003647_010 0.0 - - hypothetical protein JCGZ_25097 [Jatropha curcas]
2 Hb_120384_010 0.1929760022 - - -
3 Hb_028795_010 0.2269575335 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
4 Hb_001301_230 0.2321282607 - - PREDICTED: uncharacterized protein LOC105632949 isoform X2 [Jatropha curcas]
5 Hb_000808_070 0.2324098271 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
6 Hb_003633_140 0.2379858082 - - PREDICTED: uncharacterized protein LOC105647486 isoform X1 [Jatropha curcas]
7 Hb_002073_040 0.2391529682 - - conserved hypothetical protein [Ricinus communis]
8 Hb_004449_050 0.2423541462 - - PREDICTED: tyrosine-sulfated glycopeptide receptor 1-like [Jatropha curcas]
9 Hb_031089_030 0.2423641733 - - ubiquitin-conjugating enzyme E2 28 [Arabidopsis thaliana]
10 Hb_006185_020 0.2438895419 - - PREDICTED: midasin [Jatropha curcas]
11 Hb_002609_010 0.2465685324 - - PREDICTED: uncharacterized protein LOC105630866 [Jatropha curcas]
12 Hb_001584_220 0.2482818451 - - galactinol synthase [Manihot esculenta]
13 Hb_001660_090 0.2509231202 - - PREDICTED: stromal 70 kDa heat shock-related protein, chloroplastic-like [Jatropha curcas]
14 Hb_000413_170 0.2542826328 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
15 Hb_000181_180 0.2588474083 - - PREDICTED: uncharacterized protein LOC105637608 [Jatropha curcas]
16 Hb_124677_060 0.2590971335 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
17 Hb_002316_050 0.2591445147 - - conserved hypothetical protein [Ricinus communis]
18 Hb_007257_050 0.2599592033 - - protein with unknown function [Ricinus communis]
19 Hb_005843_040 0.2600758991 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
20 Hb_003656_120 0.2606167027 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_003647_010 Hb_003647_010 Hb_120384_010 Hb_120384_010 Hb_003647_010--Hb_120384_010 Hb_028795_010 Hb_028795_010 Hb_003647_010--Hb_028795_010 Hb_001301_230 Hb_001301_230 Hb_003647_010--Hb_001301_230 Hb_000808_070 Hb_000808_070 Hb_003647_010--Hb_000808_070 Hb_003633_140 Hb_003633_140 Hb_003647_010--Hb_003633_140 Hb_002073_040 Hb_002073_040 Hb_003647_010--Hb_002073_040 Hb_001584_220 Hb_001584_220 Hb_120384_010--Hb_001584_220 Hb_001141_460 Hb_001141_460 Hb_120384_010--Hb_001141_460 Hb_000365_060 Hb_000365_060 Hb_120384_010--Hb_000365_060 Hb_010997_100 Hb_010997_100 Hb_120384_010--Hb_010997_100 Hb_005843_040 Hb_005843_040 Hb_120384_010--Hb_005843_040 Hb_028795_010--Hb_003633_140 Hb_009372_010 Hb_009372_010 Hb_028795_010--Hb_009372_010 Hb_002316_050 Hb_002316_050 Hb_028795_010--Hb_002316_050 Hb_018133_030 Hb_018133_030 Hb_028795_010--Hb_018133_030 Hb_028795_010--Hb_000808_070 Hb_004449_050 Hb_004449_050 Hb_028795_010--Hb_004449_050 Hb_001301_230--Hb_000808_070 Hb_004899_070 Hb_004899_070 Hb_001301_230--Hb_004899_070 Hb_006501_020 Hb_006501_020 Hb_001301_230--Hb_006501_020 Hb_000265_250 Hb_000265_250 Hb_001301_230--Hb_000265_250 Hb_002477_150 Hb_002477_150 Hb_001301_230--Hb_002477_150 Hb_011465_030 Hb_011465_030 Hb_001301_230--Hb_011465_030 Hb_003157_010 Hb_003157_010 Hb_000808_070--Hb_003157_010 Hb_000808_070--Hb_006501_020 Hb_000808_070--Hb_018133_030 Hb_007257_050 Hb_007257_050 Hb_000808_070--Hb_007257_050 Hb_000932_070 Hb_000932_070 Hb_000808_070--Hb_000932_070 Hb_002609_090 Hb_002609_090 Hb_003633_140--Hb_002609_090 Hb_003633_140--Hb_002316_050 Hb_001999_250 Hb_001999_250 Hb_003633_140--Hb_001999_250 Hb_003633_140--Hb_007257_050 Hb_031089_030 Hb_031089_030 Hb_003633_140--Hb_031089_030 Hb_000059_040 Hb_000059_040 Hb_002073_040--Hb_000059_040 Hb_002505_040 Hb_002505_040 Hb_002073_040--Hb_002505_040 Hb_000009_590 Hb_000009_590 Hb_002073_040--Hb_000009_590 Hb_004129_130 Hb_004129_130 Hb_002073_040--Hb_004129_130 Hb_029866_130 Hb_029866_130 Hb_002073_040--Hb_029866_130 Hb_000009_550 Hb_000009_550 Hb_002073_040--Hb_000009_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.927811 10.5524 0.211577 0.75858 6.18608 9.46322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.889782 2.59655 1.0219 1.24177 0.940262

CAGE analysis