Hb_003647_020

Information

Type -
Description -
Location Contig3647: 12982-16278
Sequence    

Annotation

kegg
ID pmum:103338668
description rop guanine nucleotide exchange factor 7
nr
ID KDP24531.1
description hypothetical protein JCGZ_25095 [Jatropha curcas]
swissprot
ID Q9LZN0
description Rop guanine nucleotide exchange factor 7 OS=Arabidopsis thaliana GN=ROPGEF7 PE=1 SV=1
trembl
ID A0A067JKL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25095 PE=4 SV=1
Gene Ontology
ID GO:0005829
description rop guanine nucleotide exchange factor 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37505: 13060-16328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003647_020 0.0 - - hypothetical protein JCGZ_25095 [Jatropha curcas]
2 Hb_001976_060 0.1559449097 - - PREDICTED: nucleobase-ascorbate transporter 11 isoform X1 [Jatropha curcas]
3 Hb_001004_080 0.1673192778 - - hypothetical protein POPTR_0014s14130g [Populus trichocarpa]
4 Hb_001584_130 0.1681918853 - - PREDICTED: uncharacterized protein LOC105647410 [Jatropha curcas]
5 Hb_000317_450 0.1751044811 - - PREDICTED: uncharacterized protein LOC105647032 isoform X1 [Jatropha curcas]
6 Hb_001049_150 0.1796290923 - - PREDICTED: probable beta-1,3-galactosyltransferase 11 [Jatropha curcas]
7 Hb_001623_080 0.180177282 - - calcineurin-like phosphoesterase [Manihot esculenta]
8 Hb_000390_190 0.1871412609 - - ATP binding protein, putative [Ricinus communis]
9 Hb_009913_040 0.1930588045 - - PREDICTED: transmembrane protein 87B [Jatropha curcas]
10 Hb_011926_040 0.1942970122 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
11 Hb_012339_010 0.1945238193 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000300_480 0.1964385342 - - hypothetical protein RCOM_1321910 [Ricinus communis]
13 Hb_009222_110 0.1994041344 - - PREDICTED: RING-H2 finger protein ATL52-like [Jatropha curcas]
14 Hb_000445_150 0.1998250927 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
15 Hb_000556_010 0.2016698565 - - glycerate dehydrogenase, putative [Ricinus communis]
16 Hb_000062_400 0.2022892021 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001793_050 0.2032175266 - - PREDICTED: uncharacterized protein LOC105632663 [Jatropha curcas]
18 Hb_011310_040 0.2078629584 transcription factor TF Family: bZIP transcription factor hy5, putative [Ricinus communis]
19 Hb_001675_050 0.2086777938 - - PREDICTED: uncharacterized protein LOC105635000 [Jatropha curcas]
20 Hb_003641_030 0.2095591759 - - PREDICTED: uncharacterized protein LOC105638015 [Jatropha curcas]

Gene co-expression network

sample Hb_003647_020 Hb_003647_020 Hb_001976_060 Hb_001976_060 Hb_003647_020--Hb_001976_060 Hb_001004_080 Hb_001004_080 Hb_003647_020--Hb_001004_080 Hb_001584_130 Hb_001584_130 Hb_003647_020--Hb_001584_130 Hb_000317_450 Hb_000317_450 Hb_003647_020--Hb_000317_450 Hb_001049_150 Hb_001049_150 Hb_003647_020--Hb_001049_150 Hb_001623_080 Hb_001623_080 Hb_003647_020--Hb_001623_080 Hb_001976_060--Hb_001623_080 Hb_001976_060--Hb_001049_150 Hb_001675_050 Hb_001675_050 Hb_001976_060--Hb_001675_050 Hb_000062_400 Hb_000062_400 Hb_001976_060--Hb_000062_400 Hb_000117_030 Hb_000117_030 Hb_001976_060--Hb_000117_030 Hb_004899_340 Hb_004899_340 Hb_001976_060--Hb_004899_340 Hb_001004_080--Hb_001584_130 Hb_012339_010 Hb_012339_010 Hb_001004_080--Hb_012339_010 Hb_009913_040 Hb_009913_040 Hb_001004_080--Hb_009913_040 Hb_003994_300 Hb_003994_300 Hb_001004_080--Hb_003994_300 Hb_000445_150 Hb_000445_150 Hb_001004_080--Hb_000445_150 Hb_011310_040 Hb_011310_040 Hb_001004_080--Hb_011310_040 Hb_001584_130--Hb_000445_150 Hb_001584_130--Hb_012339_010 Hb_001584_130--Hb_001049_150 Hb_001584_130--Hb_003994_300 Hb_005063_080 Hb_005063_080 Hb_000317_450--Hb_005063_080 Hb_000317_450--Hb_001623_080 Hb_000116_400 Hb_000116_400 Hb_000317_450--Hb_000116_400 Hb_003777_250 Hb_003777_250 Hb_000317_450--Hb_003777_250 Hb_006198_130 Hb_006198_130 Hb_000317_450--Hb_006198_130 Hb_000665_190 Hb_000665_190 Hb_001049_150--Hb_000665_190 Hb_001049_150--Hb_001623_080 Hb_011926_040 Hb_011926_040 Hb_001049_150--Hb_011926_040 Hb_026549_070 Hb_026549_070 Hb_001049_150--Hb_026549_070 Hb_001049_150--Hb_000062_400 Hb_001623_080--Hb_004899_340 Hb_000959_300 Hb_000959_300 Hb_001623_080--Hb_000959_300 Hb_001623_080--Hb_000665_190 Hb_011021_010 Hb_011021_010 Hb_001623_080--Hb_011021_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.68365 0.64925 8.89706 18.1208 4.72395 4.2674
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.23523 1.16483 1.46174 0.265163 16.5091

CAGE analysis