Hb_003647_060

Information

Type -
Description -
Location Contig3647: 44054-46927
Sequence    

Annotation

kegg
ID pop:POPTR_0016s10060g
description POPTRDRAFT_667933, POPTRDRAFT_667934; hypothetical protein
nr
ID XP_012087974.1
description PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JYA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25093 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37508: 44130-44240 , PASA_asmbl_37509: 44303-46884
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003647_060 0.0 - - PREDICTED: uncharacterized protein LOC105646679 isoform X2 [Jatropha curcas]
2 Hb_074783_010 0.0678522475 - - PREDICTED: uncharacterized protein LOC105649970 [Jatropha curcas]
3 Hb_007508_090 0.1018871197 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
4 Hb_001021_130 0.1031245949 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
5 Hb_000646_050 0.1056831116 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 22-like [Jatropha curcas]
6 Hb_005396_150 0.1068909204 - - protein binding protein, putative [Ricinus communis]
7 Hb_000710_060 0.1124871542 transcription factor TF Family: NAC PREDICTED: uncharacterized protein LOC105645554 isoform X2 [Jatropha curcas]
8 Hb_001053_090 0.1141883806 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 30-like [Jatropha curcas]
9 Hb_000230_390 0.1144397443 - - PREDICTED: F-box/kelch-repeat protein At3g23880 [Jatropha curcas]
10 Hb_000592_020 0.1157578433 - - PREDICTED: serine/threonine-protein kinase EDR1 [Jatropha curcas]
11 Hb_003571_030 0.1168327344 - - hypothetical protein JCGZ_25894 [Jatropha curcas]
12 Hb_012490_080 0.1170216122 - - threonine synthase, putative [Ricinus communis]
13 Hb_000049_210 0.1171724406 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
14 Hb_006615_020 0.1192593559 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
15 Hb_000252_200 0.1192933049 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000025_790 0.1197842003 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 3 [Jatropha curcas]
17 Hb_001226_040 0.1205161733 - - protein with unknown function [Ricinus communis]
18 Hb_020805_130 0.1226920216 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_000977_110 0.1226950592 - - PREDICTED: LETM1 and EF-hand domain-containing protein 1, mitochondrial [Jatropha curcas]
20 Hb_002577_010 0.1240210645 - - PREDICTED: receptor-like protein kinase HAIKU2 [Jatropha curcas]

Gene co-expression network

sample Hb_003647_060 Hb_003647_060 Hb_074783_010 Hb_074783_010 Hb_003647_060--Hb_074783_010 Hb_007508_090 Hb_007508_090 Hb_003647_060--Hb_007508_090 Hb_001021_130 Hb_001021_130 Hb_003647_060--Hb_001021_130 Hb_000646_050 Hb_000646_050 Hb_003647_060--Hb_000646_050 Hb_005396_150 Hb_005396_150 Hb_003647_060--Hb_005396_150 Hb_000710_060 Hb_000710_060 Hb_003647_060--Hb_000710_060 Hb_002577_010 Hb_002577_010 Hb_074783_010--Hb_002577_010 Hb_074783_010--Hb_001021_130 Hb_000592_020 Hb_000592_020 Hb_074783_010--Hb_000592_020 Hb_001053_090 Hb_001053_090 Hb_074783_010--Hb_001053_090 Hb_034688_020 Hb_034688_020 Hb_074783_010--Hb_034688_020 Hb_000230_390 Hb_000230_390 Hb_007508_090--Hb_000230_390 Hb_003371_090 Hb_003371_090 Hb_007508_090--Hb_003371_090 Hb_007532_030 Hb_007532_030 Hb_007508_090--Hb_007532_030 Hb_007508_090--Hb_000710_060 Hb_000189_560 Hb_000189_560 Hb_007508_090--Hb_000189_560 Hb_000213_100 Hb_000213_100 Hb_007508_090--Hb_000213_100 Hb_010174_060 Hb_010174_060 Hb_001021_130--Hb_010174_060 Hb_001021_130--Hb_007508_090 Hb_001021_130--Hb_000189_560 Hb_001969_090 Hb_001969_090 Hb_001021_130--Hb_001969_090 Hb_001617_050 Hb_001617_050 Hb_000646_050--Hb_001617_050 Hb_006938_080 Hb_006938_080 Hb_000646_050--Hb_006938_080 Hb_005348_140 Hb_005348_140 Hb_000646_050--Hb_005348_140 Hb_000003_250 Hb_000003_250 Hb_000646_050--Hb_000003_250 Hb_065525_040 Hb_065525_040 Hb_000646_050--Hb_065525_040 Hb_027380_130 Hb_027380_130 Hb_000646_050--Hb_027380_130 Hb_007747_080 Hb_007747_080 Hb_005396_150--Hb_007747_080 Hb_005634_010 Hb_005634_010 Hb_005396_150--Hb_005634_010 Hb_000049_210 Hb_000049_210 Hb_005396_150--Hb_000049_210 Hb_112198_010 Hb_112198_010 Hb_005396_150--Hb_112198_010 Hb_008725_230 Hb_008725_230 Hb_005396_150--Hb_008725_230 Hb_000140_290 Hb_000140_290 Hb_005396_150--Hb_000140_290 Hb_000185_030 Hb_000185_030 Hb_000710_060--Hb_000185_030 Hb_000710_060--Hb_000049_210 Hb_008770_030 Hb_008770_030 Hb_000710_060--Hb_008770_030 Hb_001633_210 Hb_001633_210 Hb_000710_060--Hb_001633_210 Hb_000297_010 Hb_000297_010 Hb_000710_060--Hb_000297_010 Hb_001205_240 Hb_001205_240 Hb_000710_060--Hb_001205_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.7884 19.5893 7.69619 17.0502 6.56296 9.31444
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.8884 17.0483 29.4483 21.0715 12.0721

CAGE analysis