Hb_003647_070

Information

Type -
Description -
Location Contig3647: 57415-57852
Sequence    

Annotation

kegg
ID pop:POPTR_0006s09430g
description hypothetical protein
nr
ID XP_002309099.2
description hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
swissprot
ID Q8GWP3
description Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1
trembl
ID B9HC67
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s09430g PE=4 SV=2
Gene Ontology
ID GO:0016021
description copper transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003647_070 0.0 - - hypothetical protein POPTR_0006s09430g [Populus trichocarpa]
2 Hb_002010_040 0.0139559539 - - -
3 Hb_000007_290 0.0180785715 - - hypothetical protein AALP_AAs43195U000200 [Arabis alpina]
4 Hb_005474_070 0.0197314298 - - hypothetical protein JCGZ_10579 [Jatropha curcas]
5 Hb_045260_010 0.0386584261 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
6 Hb_002042_220 0.0425732664 - - Kinesin heavy chain, putative [Ricinus communis]
7 Hb_007534_080 0.0458954849 - - d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis]
8 Hb_003058_150 0.0459288989 - - PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Jatropha curcas]
9 Hb_000363_070 0.0573191254 - - conserved hypothetical protein [Ricinus communis]
10 Hb_001097_110 0.0611433035 - - gibberellin 20-oxidase, putative [Ricinus communis]
11 Hb_000140_040 0.0613623648 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]
12 Hb_003805_110 0.0662235149 - - PREDICTED: laccase-11-like [Jatropha curcas]
13 Hb_099263_010 0.0670156912 - - hypothetical protein AALP_AAs50029U000400 [Arabis alpina]
14 Hb_001140_110 0.0698136309 - - hypothetical protein JCGZ_26123 [Jatropha curcas]
15 Hb_000940_120 0.0718489144 - - PREDICTED: proline-rich protein 4-like isoform X2 [Pyrus x bretschneideri]
16 Hb_004197_030 0.0794127927 - - hypothetical protein JCGZ_16263 [Jatropha curcas]
17 Hb_000540_080 0.0802312637 - - PREDICTED: laccase-17 [Jatropha curcas]
18 Hb_034299_010 0.0812780042 - - F-box and wd40 domain protein, putative [Ricinus communis]
19 Hb_180094_010 0.0860472447 - - PREDICTED: uncharacterized protein LOC105628311 [Jatropha curcas]
20 Hb_001951_050 0.08703199 - - chlorophyll A/B binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_003647_070 Hb_003647_070 Hb_002010_040 Hb_002010_040 Hb_003647_070--Hb_002010_040 Hb_000007_290 Hb_000007_290 Hb_003647_070--Hb_000007_290 Hb_005474_070 Hb_005474_070 Hb_003647_070--Hb_005474_070 Hb_045260_010 Hb_045260_010 Hb_003647_070--Hb_045260_010 Hb_002042_220 Hb_002042_220 Hb_003647_070--Hb_002042_220 Hb_007534_080 Hb_007534_080 Hb_003647_070--Hb_007534_080 Hb_002010_040--Hb_000007_290 Hb_002010_040--Hb_005474_070 Hb_002010_040--Hb_002042_220 Hb_002010_040--Hb_045260_010 Hb_099263_010 Hb_099263_010 Hb_002010_040--Hb_099263_010 Hb_000007_290--Hb_005474_070 Hb_000007_290--Hb_002042_220 Hb_000007_290--Hb_045260_010 Hb_000007_290--Hb_099263_010 Hb_003058_150 Hb_003058_150 Hb_005474_070--Hb_003058_150 Hb_005474_070--Hb_002042_220 Hb_005474_070--Hb_007534_080 Hb_000363_070 Hb_000363_070 Hb_045260_010--Hb_000363_070 Hb_000540_080 Hb_000540_080 Hb_045260_010--Hb_000540_080 Hb_045260_010--Hb_099263_010 Hb_004197_030 Hb_004197_030 Hb_002042_220--Hb_004197_030 Hb_000940_120 Hb_000940_120 Hb_002042_220--Hb_000940_120 Hb_007534_080--Hb_003058_150 Hb_001097_110 Hb_001097_110 Hb_007534_080--Hb_001097_110 Hb_000140_040 Hb_000140_040 Hb_007534_080--Hb_000140_040 Hb_003805_110 Hb_003805_110 Hb_007534_080--Hb_003805_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.238379 0.607666 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.15236

CAGE analysis