Hb_003647_110

Information

Type -
Description -
Location Contig3647: 116370-116783
Sequence    

Annotation

kegg
ID mtr:MTR_6g061940
description 18.2 kDa class I heat shock protein
nr
ID XP_011036031.1
description PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
swissprot
ID P04795
description 17.6 kDa class I heat shock protein OS=Glycine max GN=HSP17.6-L PE=3 SV=1
trembl
ID G7KNT7
description 17.6 kDa class I heat shock protein OS=Medicago truncatula GN=MTR_6g061940 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003647_110 0.0 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
2 Hb_003623_040 0.179377107 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
3 Hb_000173_180 0.186180364 - - PREDICTED: adenylate isopentenyltransferase 5, chloroplastic [Jatropha curcas]
4 Hb_028707_100 0.1958444613 - - hypothetical protein RCOM_1687010 [Ricinus communis]
5 Hb_012787_020 0.2004931744 - - PREDICTED: thioredoxin H7-like [Jatropha curcas]
6 Hb_000580_210 0.2047945731 - - PREDICTED: cysteine-rich repeat secretory protein 15 [Jatropha curcas]
7 Hb_007101_070 0.2065074619 - - PREDICTED: serine/threonine-protein kinase PBS1 [Jatropha curcas]
8 Hb_000645_080 0.2121036016 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
9 Hb_049453_010 0.2128609505 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_005588_050 0.2141169988 - - conserved hypothetical protein [Ricinus communis]
11 Hb_028514_010 0.2141396657 - - PREDICTED: protein PHLOEM PROTEIN 2-LIKE A9 [Jatropha curcas]
12 Hb_005183_130 0.2209218796 - - glycogenin, putative [Ricinus communis]
13 Hb_000172_450 0.2214742527 - - Uncharacterized protein TCM_001203 [Theobroma cacao]
14 Hb_000087_190 0.2237069933 - - hypothetical protein CICLE_v10033278mg [Citrus clementina]
15 Hb_012395_250 0.2242129374 - - hypothetical protein RCOM_1217340 [Ricinus communis]
16 Hb_000847_110 0.2263321339 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000197_260 0.2265663096 - - hypothetical protein PRUPE_ppa025448mg [Prunus persica]
18 Hb_005183_070 0.227547482 - - PREDICTED: calmodulin-like protein 5 [Solanum lycopersicum]
19 Hb_000482_080 0.2282924988 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
20 Hb_002997_150 0.2288468978 - - hypothetical protein RCOM_1406750 [Ricinus communis]

Gene co-expression network

sample Hb_003647_110 Hb_003647_110 Hb_003623_040 Hb_003623_040 Hb_003647_110--Hb_003623_040 Hb_000173_180 Hb_000173_180 Hb_003647_110--Hb_000173_180 Hb_028707_100 Hb_028707_100 Hb_003647_110--Hb_028707_100 Hb_012787_020 Hb_012787_020 Hb_003647_110--Hb_012787_020 Hb_000580_210 Hb_000580_210 Hb_003647_110--Hb_000580_210 Hb_007101_070 Hb_007101_070 Hb_003647_110--Hb_007101_070 Hb_000176_080 Hb_000176_080 Hb_003623_040--Hb_000176_080 Hb_005183_130 Hb_005183_130 Hb_003623_040--Hb_005183_130 Hb_025645_020 Hb_025645_020 Hb_003623_040--Hb_025645_020 Hb_030565_050 Hb_030565_050 Hb_003623_040--Hb_030565_050 Hb_003554_040 Hb_003554_040 Hb_003623_040--Hb_003554_040 Hb_000108_180 Hb_000108_180 Hb_003623_040--Hb_000108_180 Hb_005588_050 Hb_005588_050 Hb_000173_180--Hb_005588_050 Hb_001722_110 Hb_001722_110 Hb_000173_180--Hb_001722_110 Hb_049453_010 Hb_049453_010 Hb_000173_180--Hb_049453_010 Hb_000339_060 Hb_000339_060 Hb_000173_180--Hb_000339_060 Hb_003638_020 Hb_003638_020 Hb_000173_180--Hb_003638_020 Hb_000173_180--Hb_000580_210 Hb_002186_170 Hb_002186_170 Hb_028707_100--Hb_002186_170 Hb_003023_030 Hb_003023_030 Hb_028707_100--Hb_003023_030 Hb_028707_100--Hb_007101_070 Hb_080601_010 Hb_080601_010 Hb_028707_100--Hb_080601_010 Hb_002186_110 Hb_002186_110 Hb_028707_100--Hb_002186_110 Hb_002534_070 Hb_002534_070 Hb_028707_100--Hb_002534_070 Hb_012787_020--Hb_005588_050 Hb_071079_040 Hb_071079_040 Hb_012787_020--Hb_071079_040 Hb_000645_080 Hb_000645_080 Hb_012787_020--Hb_000645_080 Hb_028514_010 Hb_028514_010 Hb_012787_020--Hb_028514_010 Hb_001541_170 Hb_001541_170 Hb_012787_020--Hb_001541_170 Hb_115572_010 Hb_115572_010 Hb_012787_020--Hb_115572_010 Hb_000580_210--Hb_005588_050 Hb_000482_080 Hb_000482_080 Hb_000580_210--Hb_000482_080 Hb_004158_040 Hb_004158_040 Hb_000580_210--Hb_004158_040 Hb_000991_060 Hb_000991_060 Hb_000580_210--Hb_000991_060 Hb_000580_210--Hb_001541_170 Hb_003399_110 Hb_003399_110 Hb_007101_070--Hb_003399_110 Hb_152914_010 Hb_152914_010 Hb_007101_070--Hb_152914_010 Hb_002890_330 Hb_002890_330 Hb_007101_070--Hb_002890_330 Hb_103225_030 Hb_103225_030 Hb_007101_070--Hb_103225_030 Hb_007101_070--Hb_002186_110 Hb_000137_050 Hb_000137_050 Hb_007101_070--Hb_000137_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.915448 9.55166 5.66444 74.5992 11.2542 0.999687
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.560112 0 0.237155 0.062442 16.9435

CAGE analysis