Hb_003647_130

Information

Type -
Description -
Location Contig3647: 121065-125936
Sequence    

Annotation

kegg
ID rcu:RCOM_0303160
description hypothetical protein
nr
ID XP_012087967.1
description PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JY97
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25088 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37512: 122883-123311 , PASA_asmbl_37513: 123590-123953 , PASA_asmbl_37514: 123964-124485 , PASA_asmbl_37515: 124511-125340
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003647_130 0.0 - - PREDICTED: uncharacterized protein LOC105646674 [Jatropha curcas]
2 Hb_009079_030 0.0615648887 - - PREDICTED: general transcription factor IIF subunit 2 [Jatropha curcas]
3 Hb_001232_010 0.0686266004 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
4 Hb_000614_240 0.0753575872 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
5 Hb_001473_180 0.0771588578 - - glutathione reductase [Hevea brasiliensis]
6 Hb_003294_070 0.0784279575 - - hypothetical protein RCOM_1714550 [Ricinus communis]
7 Hb_017862_020 0.0786809635 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
8 Hb_000111_290 0.0795115841 - - PREDICTED: E3 ubiquitin-protein ligase KEG [Jatropha curcas]
9 Hb_002471_290 0.0799556531 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X1 [Jatropha curcas]
10 Hb_000002_010 0.0822903538 - - PREDICTED: uncharacterized protein LOC105641567 [Jatropha curcas]
11 Hb_001157_090 0.0824898132 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
12 Hb_003913_070 0.083204537 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 30 [Populus euphratica]
13 Hb_006198_120 0.0838572748 - - PREDICTED: guanine nucleotide-binding protein-like NSN1 [Jatropha curcas]
14 Hb_002456_010 0.0842578883 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
15 Hb_000181_400 0.0845340118 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
16 Hb_001999_310 0.0871025447 - - PREDICTED: lysosomal beta glucosidase-like [Jatropha curcas]
17 Hb_001357_250 0.0873266159 - - PREDICTED: UPF0505 protein C16orf62 homolog [Jatropha curcas]
18 Hb_004254_090 0.0875453127 - - PREDICTED: cleavage stimulating factor 64 [Jatropha curcas]
19 Hb_003411_040 0.0882975202 - - unnamed protein product [Coffea canephora]
20 Hb_000556_120 0.0886478482 - - Spastin, putative [Ricinus communis]

Gene co-expression network

sample Hb_003647_130 Hb_003647_130 Hb_009079_030 Hb_009079_030 Hb_003647_130--Hb_009079_030 Hb_001232_010 Hb_001232_010 Hb_003647_130--Hb_001232_010 Hb_000614_240 Hb_000614_240 Hb_003647_130--Hb_000614_240 Hb_001473_180 Hb_001473_180 Hb_003647_130--Hb_001473_180 Hb_003294_070 Hb_003294_070 Hb_003647_130--Hb_003294_070 Hb_017862_020 Hb_017862_020 Hb_003647_130--Hb_017862_020 Hb_006198_120 Hb_006198_120 Hb_009079_030--Hb_006198_120 Hb_009079_030--Hb_003294_070 Hb_002471_290 Hb_002471_290 Hb_009079_030--Hb_002471_290 Hb_003913_070 Hb_003913_070 Hb_009079_030--Hb_003913_070 Hb_009079_030--Hb_001473_180 Hb_002217_030 Hb_002217_030 Hb_001232_010--Hb_002217_030 Hb_001761_130 Hb_001761_130 Hb_001232_010--Hb_001761_130 Hb_001157_090 Hb_001157_090 Hb_001232_010--Hb_001157_090 Hb_002477_090 Hb_002477_090 Hb_001232_010--Hb_002477_090 Hb_143629_110 Hb_143629_110 Hb_001232_010--Hb_143629_110 Hb_001999_310 Hb_001999_310 Hb_000614_240--Hb_001999_310 Hb_010142_020 Hb_010142_020 Hb_000614_240--Hb_010142_020 Hb_000111_290 Hb_000111_290 Hb_000614_240--Hb_000111_290 Hb_011016_050 Hb_011016_050 Hb_000614_240--Hb_011016_050 Hb_000011_060 Hb_000011_060 Hb_000614_240--Hb_000011_060 Hb_002456_010 Hb_002456_010 Hb_000614_240--Hb_002456_010 Hb_000592_030 Hb_000592_030 Hb_001473_180--Hb_000592_030 Hb_002600_150 Hb_002600_150 Hb_001473_180--Hb_002600_150 Hb_009270_020 Hb_009270_020 Hb_001473_180--Hb_009270_020 Hb_000617_180 Hb_000617_180 Hb_001473_180--Hb_000617_180 Hb_002815_030 Hb_002815_030 Hb_001473_180--Hb_002815_030 Hb_000181_400 Hb_000181_400 Hb_003294_070--Hb_000181_400 Hb_004324_130 Hb_004324_130 Hb_003294_070--Hb_004324_130 Hb_165928_030 Hb_165928_030 Hb_003294_070--Hb_165928_030 Hb_000181_320 Hb_000181_320 Hb_003294_070--Hb_000181_320 Hb_000003_320 Hb_000003_320 Hb_003294_070--Hb_000003_320 Hb_002784_020 Hb_002784_020 Hb_017862_020--Hb_002784_020 Hb_000207_180 Hb_000207_180 Hb_017862_020--Hb_000207_180 Hb_002686_030 Hb_002686_030 Hb_017862_020--Hb_002686_030 Hb_000225_040 Hb_000225_040 Hb_017862_020--Hb_000225_040 Hb_000395_130 Hb_000395_130 Hb_017862_020--Hb_000395_130 Hb_000579_230 Hb_000579_230 Hb_017862_020--Hb_000579_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.18978 2.54333 2.04682 2.53424 3.1709 2.63247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4194 3.04426 3.10202 5.63403 2.74223

CAGE analysis