Hb_003647_140

Information

Type -
Description -
Location Contig3647: 126034-128064
Sequence    

Annotation

kegg
ID pop:POPTR_0016s09990g
description POPTRDRAFT_667937; hypothetical protein
nr
ID XP_012087966.1
description PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
swissprot
ID Q93YV9
description F-box protein SKIP8 OS=Arabidopsis thaliana GN=SKIP8 PE=1 SV=1
trembl
ID A0A067JNX0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25087 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37517: 126221-128014
cDNA
(Sanger)
(ID:Location)		 021_F18.ab1: 126464-128014

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003647_140 0.0 - - PREDICTED: uncharacterized protein LOC105646673 [Jatropha curcas]
2 Hb_014834_150 0.0515130898 - - PREDICTED: phosphatidylserine decarboxylase proenzyme 1, mitochondrial isoform X1 [Jatropha curcas]
3 Hb_000373_050 0.057232372 - - PREDICTED: protein WHI3 [Jatropha curcas]
4 Hb_003938_090 0.0604544564 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000976_120 0.0609763939 - - PREDICTED: DNA polymerase zeta processivity subunit [Jatropha curcas]
6 Hb_003513_010 0.0721152943 - - Structural maintenance of chromosome 1 protein, putative [Ricinus communis]
7 Hb_001946_400 0.0725437993 - - PREDICTED: nudix hydrolase 19, chloroplastic [Jatropha curcas]
8 Hb_002986_100 0.0734691861 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
9 Hb_000270_310 0.0749485788 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Populus euphratica]
10 Hb_003878_090 0.076807489 - - PREDICTED: polynucleotide 3'-phosphatase ZDP [Jatropha curcas]
11 Hb_189216_020 0.077375825 - - PREDICTED: translin [Jatropha curcas]
12 Hb_007416_340 0.0774387238 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At4g31390, chloroplastic isoform X1 [Jatropha curcas]
13 Hb_003861_060 0.0792998944 - - PREDICTED: treacle protein [Jatropha curcas]
14 Hb_001623_270 0.0798239269 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
15 Hb_000261_020 0.0801630163 - - PREDICTED: chaperone protein dnaJ 20, chloroplastic [Jatropha curcas]
16 Hb_000137_040 0.0817509529 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
17 Hb_001922_150 0.0818195307 - - PREDICTED: WD repeat-containing protein 91 homolog isoform X1 [Jatropha curcas]
18 Hb_002217_110 0.0823426865 - - PREDICTED: craniofacial development protein 1 [Jatropha curcas]
19 Hb_183433_010 0.0837279894 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
20 Hb_007254_020 0.0838881966 - - PREDICTED: uncharacterized protein LOC105629137 [Jatropha curcas]

Gene co-expression network

sample Hb_003647_140 Hb_003647_140 Hb_014834_150 Hb_014834_150 Hb_003647_140--Hb_014834_150 Hb_000373_050 Hb_000373_050 Hb_003647_140--Hb_000373_050 Hb_003938_090 Hb_003938_090 Hb_003647_140--Hb_003938_090 Hb_000976_120 Hb_000976_120 Hb_003647_140--Hb_000976_120 Hb_003513_010 Hb_003513_010 Hb_003647_140--Hb_003513_010 Hb_001946_400 Hb_001946_400 Hb_003647_140--Hb_001946_400 Hb_003861_060 Hb_003861_060 Hb_014834_150--Hb_003861_060 Hb_014834_150--Hb_003513_010 Hb_000816_250 Hb_000816_250 Hb_014834_150--Hb_000816_250 Hb_003428_010 Hb_003428_010 Hb_014834_150--Hb_003428_010 Hb_004052_080 Hb_004052_080 Hb_014834_150--Hb_004052_080 Hb_007254_020 Hb_007254_020 Hb_000373_050--Hb_007254_020 Hb_000373_050--Hb_000976_120 Hb_000373_050--Hb_014834_150 Hb_000270_310 Hb_000270_310 Hb_000373_050--Hb_000270_310 Hb_001863_380 Hb_001863_380 Hb_000373_050--Hb_001863_380 Hb_008847_030 Hb_008847_030 Hb_003938_090--Hb_008847_030 Hb_007416_340 Hb_007416_340 Hb_003938_090--Hb_007416_340 Hb_001470_030 Hb_001470_030 Hb_003938_090--Hb_001470_030 Hb_000340_180 Hb_000340_180 Hb_003938_090--Hb_000340_180 Hb_002641_060 Hb_002641_060 Hb_003938_090--Hb_002641_060 Hb_001472_100 Hb_001472_100 Hb_000976_120--Hb_001472_100 Hb_003878_090 Hb_003878_090 Hb_000976_120--Hb_003878_090 Hb_000976_120--Hb_002641_060 Hb_000976_120--Hb_014834_150 Hb_000579_120 Hb_000579_120 Hb_000976_120--Hb_000579_120 Hb_003513_010--Hb_004052_080 Hb_000137_040 Hb_000137_040 Hb_003513_010--Hb_000137_040 Hb_000869_020 Hb_000869_020 Hb_003513_010--Hb_000869_020 Hb_003513_010--Hb_003861_060 Hb_007007_120 Hb_007007_120 Hb_003513_010--Hb_007007_120 Hb_001021_150 Hb_001021_150 Hb_001946_400--Hb_001021_150 Hb_001946_400--Hb_014834_150 Hb_001599_040 Hb_001599_040 Hb_001946_400--Hb_001599_040 Hb_002553_060 Hb_002553_060 Hb_001946_400--Hb_002553_060 Hb_001946_400--Hb_008847_030 Hb_001946_400--Hb_007416_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.59639 6.30674 8.93433 7.30468 5.74164 6.82171
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.82098 10.5166 4.28499 4.86084 7.69204

CAGE analysis